Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF6230 and GFF6231 are separated by 100 nucleotides GFF6231 and GFF6232 are separated by 9 nucleotides
GFF6230 - Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain, at 14,563 to 15,540
GFF6230
GFF6231 - Amidases related to nicotinamidase, at 15,641 to 16,273
GFF6231
GFF6232 - hypothetical protein, at 16,283 to 21,721
GFF6232
Position (kb) 15
16
17 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 14.930 kb on + strand, within GFF6230 at 14.930 kb on + strand, within GFF6230 at 14.931 kb on - strand, within GFF6230 at 14.931 kb on - strand, within GFF6230 at 14.931 kb on - strand, within GFF6230 at 14.931 kb on - strand, within GFF6230 at 15.086 kb on + strand, within GFF6230 at 15.086 kb on + strand, within GFF6230 at 15.086 kb on + strand, within GFF6230 at 15.086 kb on + strand, within GFF6230 at 15.087 kb on - strand, within GFF6230 at 15.087 kb on - strand, within GFF6230 at 15.087 kb on - strand, within GFF6230 at 15.087 kb on - strand, within GFF6230 at 15.087 kb on - strand, within GFF6230 at 15.087 kb on - strand, within GFF6230 at 15.087 kb on - strand, within GFF6230 at 15.087 kb on - strand, within GFF6230 at 15.087 kb on - strand, within GFF6230 at 15.810 kb on + strand, within GFF6231 at 15.811 kb on - strand, within GFF6231 at 15.998 kb on + strand, within GFF6231 at 15.999 kb on - strand, within GFF6231 at 15.999 kb on - strand, within GFF6231 at 16.031 kb on + strand, within GFF6231 at 16.032 kb on - strand, within GFF6231 at 16.032 kb on - strand, within GFF6231 at 16.032 kb on - strand, within GFF6231 at 16.095 kb on - strand, within GFF6231 at 16.095 kb on - strand, within GFF6231 at 16.455 kb on + strand at 16.455 kb on + strand at 16.456 kb on - strand at 16.456 kb on - strand at 16.551 kb on + strand at 16.552 kb on - strand at 16.552 kb on - strand at 16.758 kb on + strand at 16.759 kb on - strand at 16.759 kb on - strand at 16.821 kb on + strand at 16.821 kb on + strand at 16.833 kb on + strand, within GFF6232 at 16.833 kb on + strand, within GFF6232 at 16.833 kb on + strand, within GFF6232 at 16.834 kb on - strand, within GFF6232 at 16.917 kb on + strand, within GFF6232 at 16.918 kb on - strand, within GFF6232 at 16.918 kb on - strand, within GFF6232 at 16.918 kb on - strand, within GFF6232 at 17.130 kb on + strand, within GFF6232 at 17.130 kb on + strand, within GFF6232 at 17.131 kb on - strand, within GFF6232 at 17.131 kb on - strand, within GFF6232
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL remove 14,930 + GFF6230 0.38 -0.0 14,930 + GFF6230 0.38 +0.7 14,931 - GFF6230 0.38 -0.3 14,931 - GFF6230 0.38 +0.3 14,931 - GFF6230 0.38 -1.3 14,931 - GFF6230 0.38 -0.6 15,086 + GFF6230 0.53 +0.1 15,086 + GFF6230 0.53 -0.5 15,086 + GFF6230 0.53 -1.0 15,086 + GFF6230 0.53 +0.5 15,087 - GFF6230 0.54 -0.5 15,087 - GFF6230 0.54 -0.6 15,087 - GFF6230 0.54 -0.1 15,087 - GFF6230 0.54 -0.3 15,087 - GFF6230 0.54 -0.5 15,087 - GFF6230 0.54 -0.6 15,087 - GFF6230 0.54 -3.3 15,087 - GFF6230 0.54 -2.1 15,087 - GFF6230 0.54 -1.1 15,810 + GFF6231 0.27 -1.3 15,811 - GFF6231 0.27 +1.1 15,998 + GFF6231 0.56 +0.2 15,999 - GFF6231 0.57 +1.4 15,999 - GFF6231 0.57 -0.3 16,031 + GFF6231 0.62 -0.8 16,032 - GFF6231 0.62 -1.1 16,032 - GFF6231 0.62 -0.1 16,032 - GFF6231 0.62 -0.7 16,095 - GFF6231 0.72 -0.5 16,095 - GFF6231 0.72 -1.3 16,455 + +0.1 16,455 + +1.3 16,456 - +1.2 16,456 - +0.1 16,551 + +0.2 16,552 - -0.7 16,552 - -0.7 16,758 + -0.5 16,759 - -0.2 16,759 - +0.0 16,821 + +1.8 16,821 + -1.5 16,833 + GFF6232 0.10 +1.5 16,833 + GFF6232 0.10 -1.5 16,833 + GFF6232 0.10 +0.9 16,834 - GFF6232 0.10 +1.3 16,917 + GFF6232 0.12 +0.3 16,918 - GFF6232 0.12 +0.4 16,918 - GFF6232 0.12 +0.2 16,918 - GFF6232 0.12 +0.9 17,130 + GFF6232 0.16 -0.4 17,130 + GFF6232 0.16 -0.1 17,131 - GFF6232 0.16 -0.4 17,131 - GFF6232 0.16 +0.9
Or see this region's nucleotide sequence