Strain Fitness in Variovorax sp. SCN45 around GFF6044

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
103,569	-		GFF6043	0.28	-0.2
103,741	+		GFF6043	0.42	-0.9
103,741	+		GFF6043	0.42	-0.2
103,742	-		GFF6043	0.42	-0.4
103,742	-		GFF6043	0.42	+0.5
103,757	+		GFF6043	0.43	+0.5
103,757	+		GFF6043	0.43	+0.8
103,757	+		GFF6043	0.43	-0.3
103,757	+		GFF6043	0.43	-1.9
103,757	+		GFF6043	0.43	+0.5
103,757	+		GFF6043	0.43	-0.3
103,758	-		GFF6043	0.43	+0.3
103,758	-		GFF6043	0.43	-0.2
103,758	-		GFF6043	0.43	-0.3
103,758	-		GFF6043	0.43	+0.0
103,758	-		GFF6043	0.43	-0.3
104,242	+		GFF6043	0.81	-1.3
104,242	+		GFF6043	0.81	+0.1
104,242	+		GFF6043	0.81	-0.6
104,242	+		GFF6043	0.81	-0.4
104,242	+		GFF6043	0.81	-0.1
104,243	-		GFF6043	0.81	+0.8
104,243	-		GFF6043	0.81	-0.8
104,243	-		GFF6043	0.81	+1.4
104,243	-		GFF6043	0.81	+0.0
104,332	+		GFF6043	0.88	+0.2
104,332	+		GFF6043	0.88	+1.9
104,332	+		GFF6043	0.88	-0.8
104,332	+		GFF6043	0.88	-0.7
104,333	-		GFF6043	0.88	+1.7
104,333	-		GFF6043	0.88	-0.7
104,333	-		GFF6043	0.88	+0.9
104,333	-		GFF6043	0.88	-1.9
104,333	-		GFF6043	0.88	+0.1
104,333	-		GFF6043	0.88	+0.7
104,526	+				-0.7
104,526	+				+0.8
104,526	+				-0.9
104,703	+				-0.7
104,703	+				+2.4
104,703	+				+0.7
104,703	+				+1.7
104,703	+				-0.5
104,703	+				-0.3
104,703	+				+0.1
104,703	+				+1.2
104,703	+				-0.2
104,703	+				-0.0
104,703	+				-0.3
104,704	-				+0.1
104,704	-				-0.3
104,704	-				-0.7
104,704	-				-1.1
104,704	-				-0.7
104,805	+		GFF6044	0.15	+0.7
104,805	+		GFF6044	0.15	-0.5
104,806	-		GFF6044	0.15	-0.1
104,806	-		GFF6044	0.15	-0.6
104,806	-		GFF6044	0.15	-0.1
104,806	-		GFF6044	0.15	+0.4
104,806	-		GFF6044	0.15	-0.3
105,123	+		GFF6044	0.32	-0.1
105,124	-		GFF6044	0.32	-1.1
105,229	+		GFF6044	0.38	+0.1
105,229	+		GFF6044	0.38	+0.1
105,229	+		GFF6044	0.38	-0.5
105,229	+		GFF6044	0.38	+1.0
105,229	+		GFF6044	0.38	-0.1
105,230	-		GFF6044	0.38	-0.2
105,230	-		GFF6044	0.38	+0.6
105,230	-		GFF6044	0.38	-0.2
105,309	+		GFF6044	0.42	-0.0
105,309	+		GFF6044	0.42	-0.9
105,588	+		GFF6044	0.57	-0.0
105,588	+		GFF6044	0.57	+0.1
105,588	+		GFF6044	0.57	+0.8
105,589	-		GFF6044	0.57	-2.2
105,589	-		GFF6044	0.57	-1.0
105,589	-		GFF6044	0.57	+0.1
105,675	+		GFF6044	0.62	+0.1
105,675	+		GFF6044	0.62	-1.0
105,675	+		GFF6044	0.62	+0.0
105,675	+		GFF6044	0.62	-2.3
105,676	-		GFF6044	0.62	-0.3
105,676	-		GFF6044	0.62	-0.6
105,676	-		GFF6044	0.62	-0.2
105,676	-		GFF6044	0.62	+0.4
105,726	+		GFF6044	0.65	-1.9
105,726	+		GFF6044	0.65	+1.1
105,726	+		GFF6044	0.65	-1.4
105,726	+		GFF6044	0.65	-0.3
105,727	-		GFF6044	0.65	+0.0
105,727	-		GFF6044	0.65	+0.9
105,727	-		GFF6044	0.65	-2.0
105,727	-		GFF6044	0.65	+0.0
105,819	+		GFF6044	0.70	-0.9
105,819	+		GFF6044	0.70	+0.8
105,819	+		GFF6044	0.70	-0.2
105,819	+		GFF6044	0.70	+0.2
105,820	-		GFF6044	0.70	-0.2
105,820	-		GFF6044	0.70	-0.5
105,820	-		GFF6044	0.70	-0.4
105,820	-		GFF6044	0.70	+4.0
105,820	-		GFF6044	0.70	+0.3
105,820	-		GFF6044	0.70	-1.3
105,820	-		GFF6044	0.70	+0.1
105,864	+		GFF6044	0.72	-0.9
105,864	+		GFF6044	0.72	-1.1
105,864	+		GFF6044	0.72	+0.4
105,865	-		GFF6044	0.72	+0.1
106,004	+		GFF6044	0.80	+0.1
106,004	+		GFF6044	0.80	+0.7
106,004	+		GFF6044	0.80	+0.8
106,005	-		GFF6044	0.80	-1.1
106,005	-		GFF6044	0.80	+0.3
106,005	-		GFF6044	0.80	+0.3
106,005	-		GFF6044	0.80	-1.5
106,008	+		GFF6044	0.80	+0.3
106,009	-		GFF6044	0.80	-1.0
106,272	+				-0.1
106,272	+				-0.6
106,272	+				+2.3
106,273	-				-0.3
106,489	+		GFF6045	0.25	-1.8
106,489	+		GFF6045	0.25	-0.0
106,489	+		GFF6045	0.25	-0.5
106,489	+		GFF6045	0.25	-0.5
106,489	+		GFF6045	0.25	-0.2
106,489	+		GFF6045	0.25	-0.9
106,489	+		GFF6045	0.25	-1.1
106,490	-		GFF6045	0.26	-0.4
106,490	-		GFF6045	0.26	+0.5
106,504	+		GFF6045	0.32	-0.4
106,504	+		GFF6045	0.32	+0.3
106,504	+		GFF6045	0.32	+1.3
106,505	-		GFF6045	0.32	-1.0
106,505	-		GFF6045	0.32	+1.3
106,570	+		GFF6045	0.59	-0.4
106,570	+		GFF6045	0.59	-0.0
106,570	+		GFF6045	0.59	-0.0
106,570	+		GFF6045	0.59	-0.3
106,570	+		GFF6045	0.59	-0.1
106,570	+		GFF6045	0.59	+1.1
106,570	+		GFF6045	0.59	-0.1
106,570	+		GFF6045	0.59	-0.5
106,570	+		GFF6045	0.59	+1.4
106,570	+		GFF6045	0.59	+0.2
106,570	+		GFF6045	0.59	-1.5
106,571	-		GFF6045	0.60	-1.2
106,571	-		GFF6045	0.60	-1.0
106,571	-		GFF6045	0.60	-0.4
106,571	-		GFF6045	0.60	-1.3
106,571	-		GFF6045	0.60	+0.8
106,571	-		GFF6045	0.60	-0.3
106,571	-		GFF6045	0.60	-0.0
106,571	-		GFF6045	0.60	-0.3
106,663	+				+0.4
106,664	-				-1.1
106,664	-				-1.1
106,664	-				+0.3
106,664	-				-0.2
106,664	-				-0.0
106,908	+		GFF6046	0.62	-2.5
106,908	+		GFF6046	0.62	+0.6
106,908	+		GFF6046	0.62	-0.5
106,909	-		GFF6046	0.62	+1.2
106,909	-		GFF6046	0.62	-0.8
106,909	-		GFF6046	0.62	-0.3
106,909	-		GFF6046	0.62	-0.9
107,057	+				-0.1
107,058	-				+0.6
107,058	-				-0.3
107,058	-				-0.5
107,058	-				+0.2
107,059	+				-0.9
107,059	+				-0.4
107,059	+				-0.7
107,060	-				-1.3
107,060	-				-0.9
107,060	-				-2.3
107,070	+				+0.3
107,071	-				-1.8
107,071	-				+0.5
107,071	-				-2.4
107,089	+				-0.9
107,089	+				-0.6
107,089	+				-0.7
107,090	-				+0.4
107,090	-				-0.7
107,090	-				-0.4
107,090	-				+0.1
107,121	+				-0.0
107,121	+				-0.1
107,122	-				+2.7
107,122	-				-1.9
107,122	-				-2.9
107,234	+		GFF6047	0.28	+0.9
107,234	+		GFF6047	0.28	-0.7
107,234	+		GFF6047	0.28	-0.1
107,235	-		GFF6047	0.28	-0.3
107,352	+		GFF6047	0.47	+2.3
107,352	+		GFF6047	0.47	+2.1