Strain Fitness in Variovorax sp. SCN45 around GFF5769

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
140,309	+		GFF5767	0.64	+0.5
140,315	+		GFF5767	0.65	-1.5
140,316	-		GFF5767	0.65	-0.3
140,316	-		GFF5767	0.65	+0.7
140,316	-		GFF5767	0.65	+0.1
140,316	-		GFF5767	0.65	-0.5
140,366	+		GFF5767	0.70	-1.7
140,366	+		GFF5767	0.70	-0.0
140,367	-		GFF5767	0.70	-0.1
140,448	-		GFF5767	0.77	-0.6
140,650	-				+0.5
140,720	+				-1.3
141,298	+		GFF5769	0.27	+0.5
141,299	-		GFF5769	0.27	-0.2
141,479	-		GFF5769	0.55	+0.9
141,766	+				+0.1
141,833	-				-1.3
141,887	+				-0.5
141,888	-				-0.1
141,888	-				+1.3
141,888	-				-0.7
142,456	+		GFF5770	0.47	-0.6
142,456	+		GFF5770	0.47	-1.5
142,457	-		GFF5770	0.47	+2.0
142,457	-		GFF5770	0.47	+0.1
142,561	+		GFF5770	0.56	-0.4
142,562	-		GFF5770	0.56	+0.1
142,562	-		GFF5770	0.56	-1.1
142,750	+		GFF5770	0.72	-0.7
142,750	+		GFF5770	0.72	+0.6
142,751	-		GFF5770	0.72	-0.3