Strain Fitness in Variovorax sp. SCN45 around GFF524

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF523 and GFF524 are separated by 1 nucleotidesGFF524 and GFF525 are separated by 98 nucleotides GFF523 - Tripartite tricarboxylate transporter TctA family, at 565,227 to 566,750 GFF523 GFF524 - Tripartite tricarboxylate transporter TctB family, at 566,752 to 567,288 GFF524 GFF525 - Tripartite tricarboxylate transporter TctC family, at 567,387 to 568,346 GFF525 Position (kb) 566 567 568Strain fitness (log2 ratio) -2 -1 0 1 2 3at 565.915 kb on + strand, within GFF523at 565.916 kb on - strand, within GFF523at 565.916 kb on - strand, within GFF523at 565.916 kb on - strand, within GFF523at 565.916 kb on - strand, within GFF523at 566.034 kb on + strand, within GFF523at 566.077 kb on + strand, within GFF523at 566.077 kb on + strand, within GFF523at 566.077 kb on + strand, within GFF523at 566.077 kb on + strand, within GFF523at 566.078 kb on - strand, within GFF523at 566.078 kb on - strand, within GFF523at 566.078 kb on - strand, within GFF523at 566.089 kb on + strand, within GFF523at 566.089 kb on + strand, within GFF523at 566.089 kb on + strand, within GFF523at 566.089 kb on + strand, within GFF523at 566.174 kb on - strand, within GFF523at 566.174 kb on - strand, within GFF523at 566.207 kb on + strand, within GFF523at 566.311 kb on + strand, within GFF523at 566.311 kb on + strand, within GFF523at 566.312 kb on - strand, within GFF523at 566.312 kb on - strand, within GFF523at 566.312 kb on - strand, within GFF523at 566.533 kb on + strand, within GFF523at 566.533 kb on + strand, within GFF523at 566.533 kb on + strand, within GFF523at 566.533 kb on + strand, within GFF523at 566.534 kb on - strand, within GFF523at 566.534 kb on - strand, within GFF523at 566.534 kb on - strand, within GFF523at 566.534 kb on - strand, within GFF523at 566.534 kb on - strand, within GFF523at 566.534 kb on - strand, within GFF523at 566.534 kb on - strand, within GFF523at 566.534 kb on - strand, within GFF523at 566.545 kb on + strand, within GFF523at 566.545 kb on + strand, within GFF523at 566.545 kb on + strand, within GFF523at 566.545 kb on + strand, within GFF523at 566.545 kb on + strand, within GFF523at 566.545 kb on + strand, within GFF523at 566.546 kb on - strand, within GFF523at 566.546 kb on - strand, within GFF523at 566.546 kb on - strand, within GFF523at 566.546 kb on - strand, within GFF523at 566.548 kb on + strand, within GFF523at 566.548 kb on + strand, within GFF523at 566.548 kb on + strand, within GFF523at 566.548 kb on + strand, within GFF523at 566.548 kb on + strand, within GFF523at 566.548 kb on + strand, within GFF523at 566.548 kb on + strand, within GFF523at 566.548 kb on + strand, within GFF523at 566.549 kb on - strand, within GFF523at 566.549 kb on - strand, within GFF523at 566.549 kb on - strand, within GFF523at 566.549 kb on - strand, within GFF523at 566.549 kb on - strand, within GFF523at 566.927 kb on + strand, within GFF524at 566.927 kb on + strand, within GFF524at 566.927 kb on + strand, within GFF524at 566.927 kb on + strand, within GFF524at 566.927 kb on + strand, within GFF524at 566.927 kb on + strand, within GFF524at 566.927 kb on + strand, within GFF524at 566.928 kb on - strand, within GFF524at 566.928 kb on - strand, within GFF524at 566.928 kb on - strand, within GFF524at 566.928 kb on - strand, within GFF524at 566.928 kb on - strand, within GFF524at 566.928 kb on - strand, within GFF524at 567.020 kb on + strand, within GFF524at 567.020 kb on + strand, within GFF524at 567.020 kb on + strand, within GFF524at 567.020 kb on + strand, within GFF524at 567.021 kb on - strand, within GFF524at 567.590 kb on - strand, within GFF525at 567.712 kb on + strand, within GFF525at 567.712 kb on + strand, within GFF525at 567.713 kb on - strand, within GFF525at 567.713 kb on - strand, within GFF525at 567.713 kb on - strand, within GFF525at 567.713 kb on - strand, within GFF525at 567.713 kb on - strand, within GFF525at 567.713 kb on - strand, within GFF525at 567.713 kb on - strand, within GFF525at 567.805 kb on + strand, within GFF525at 567.805 kb on + strand, within GFF525at 567.805 kb on + strand, within GFF525at 567.805 kb on + strand, within GFF525at 567.805 kb on + strand, within GFF525at 567.805 kb on + strand, within GFF525at 567.805 kb on + strand, within GFF525at 567.805 kb on + strand, within GFF525at 567.805 kb on + strand, within GFF525at 567.805 kb on + strand, within GFF525at 567.805 kb on + strand, within GFF525at 567.805 kb on + strand, within GFF525at 567.805 kb on + strand, within GFF525at 567.805 kb on + strand, within GFF525at 567.806 kb on - strand, within GFF525at 567.806 kb on - strand, within GFF525at 567.806 kb on - strand, within GFF525at 567.806 kb on - strand, within GFF525at 567.806 kb on - strand, within GFF525at 567.806 kb on - strand, within GFF525at 567.806 kb on - strand, within GFF525at 567.806 kb on - strand, within GFF525at 567.806 kb on - strand, within GFF525at 567.806 kb on - strand, within GFF525at 567.806 kb on - strand, within GFF525at 567.806 kb on - strand, within GFF525at 567.806 kb on - strand, within GFF525at 567.982 kb on + strand, within GFF525at 567.982 kb on + strand, within GFF525at 567.982 kb on + strand, within GFF525at 567.982 kb on + strand, within GFF525at 567.982 kb on + strand, within GFF525at 567.982 kb on + strand, within GFF525at 567.982 kb on + strand, within GFF525at 567.983 kb on - strand, within GFF525at 567.983 kb on - strand, within GFF525at 567.983 kb on - strand, within GFF525at 568.159 kb on + strand, within GFF525at 568.159 kb on + strand, within GFF525at 568.160 kb on - strand, within GFF525at 568.160 kb on - strand, within GFF525

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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565,915 + GFF523 0.45 +0.6
565,916 - GFF523 0.45 -0.2
565,916 - GFF523 0.45 +0.2
565,916 - GFF523 0.45 -0.9
565,916 - GFF523 0.45 -1.3
566,034 + GFF523 0.53 +0.0
566,077 + GFF523 0.56 -0.1
566,077 + GFF523 0.56 -0.4
566,077 + GFF523 0.56 +0.2
566,077 + GFF523 0.56 +0.3
566,078 - GFF523 0.56 +0.1
566,078 - GFF523 0.56 -0.4
566,078 - GFF523 0.56 -0.2
566,089 + GFF523 0.57 -0.5
566,089 + GFF523 0.57 -1.0
566,089 + GFF523 0.57 -0.1
566,089 + GFF523 0.57 -0.0
566,174 - GFF523 0.62 -0.6
566,174 - GFF523 0.62 -1.4
566,207 + GFF523 0.64 +1.7
566,311 + GFF523 0.71 +0.4
566,311 + GFF523 0.71 +1.3
566,312 - GFF523 0.71 -2.3
566,312 - GFF523 0.71 +1.2
566,312 - GFF523 0.71 -0.5
566,533 + GFF523 0.86 +1.3
566,533 + GFF523 0.86 +0.1
566,533 + GFF523 0.86 -0.3
566,533 + GFF523 0.86 -0.2
566,534 - GFF523 0.86 +0.8
566,534 - GFF523 0.86 -0.2
566,534 - GFF523 0.86 -0.9
566,534 - GFF523 0.86 +0.2
566,534 - GFF523 0.86 -0.5
566,534 - GFF523 0.86 +1.3
566,534 - GFF523 0.86 +1.3
566,534 - GFF523 0.86 -1.3
566,545 + GFF523 0.86 +0.1
566,545 + GFF523 0.86 -0.2
566,545 + GFF523 0.86 +0.1
566,545 + GFF523 0.86 +0.1
566,545 + GFF523 0.86 -0.8
566,545 + GFF523 0.86 +0.3
566,546 - GFF523 0.87 -0.6
566,546 - GFF523 0.87 -0.3
566,546 - GFF523 0.87 +0.6
566,546 - GFF523 0.87 +0.2
566,548 + GFF523 0.87 +0.3
566,548 + GFF523 0.87 -1.0
566,548 + GFF523 0.87 -0.2
566,548 + GFF523 0.87 -0.6
566,548 + GFF523 0.87 +0.1
566,548 + GFF523 0.87 +0.4
566,548 + GFF523 0.87 -0.2
566,548 + GFF523 0.87 -0.1
566,549 - GFF523 0.87 +0.4
566,549 - GFF523 0.87 +0.2
566,549 - GFF523 0.87 -0.2
566,549 - GFF523 0.87 -0.0
566,549 - GFF523 0.87 +0.3
566,927 + GFF524 0.33 +1.9
566,927 + GFF524 0.33 -2.1
566,927 + GFF524 0.33 -1.4
566,927 + GFF524 0.33 -0.3
566,927 + GFF524 0.33 -0.0
566,927 + GFF524 0.33 -0.4
566,927 + GFF524 0.33 -0.3
566,928 - GFF524 0.33 +0.1
566,928 - GFF524 0.33 +0.8
566,928 - GFF524 0.33 -1.0
566,928 - GFF524 0.33 -0.5
566,928 - GFF524 0.33 +0.2
566,928 - GFF524 0.33 -0.3
567,020 + GFF524 0.50 -0.4
567,020 + GFF524 0.50 -0.0
567,020 + GFF524 0.50 -0.9
567,020 + GFF524 0.50 -1.3
567,021 - GFF524 0.50 -0.6
567,590 - GFF525 0.21 -0.4
567,712 + GFF525 0.34 -0.8
567,712 + GFF525 0.34 +0.1
567,713 - GFF525 0.34 +0.0
567,713 - GFF525 0.34 -0.5
567,713 - GFF525 0.34 -0.9
567,713 - GFF525 0.34 -0.6
567,713 - GFF525 0.34 -0.7
567,713 - GFF525 0.34 +0.0
567,713 - GFF525 0.34 -1.9
567,805 + GFF525 0.44 -0.4
567,805 + GFF525 0.44 -0.8
567,805 + GFF525 0.44 +0.7
567,805 + GFF525 0.44 -0.2
567,805 + GFF525 0.44 -1.0
567,805 + GFF525 0.44 -1.0
567,805 + GFF525 0.44 +0.8
567,805 + GFF525 0.44 -0.4
567,805 + GFF525 0.44 +0.1
567,805 + GFF525 0.44 +2.5
567,805 + GFF525 0.44 -1.0
567,805 + GFF525 0.44 +0.3
567,805 + GFF525 0.44 +0.3
567,805 + GFF525 0.44 +1.5
567,806 - GFF525 0.44 -0.3
567,806 - GFF525 0.44 +0.1
567,806 - GFF525 0.44 -0.2
567,806 - GFF525 0.44 +0.3
567,806 - GFF525 0.44 -0.0
567,806 - GFF525 0.44 -0.6
567,806 - GFF525 0.44 -0.5
567,806 - GFF525 0.44 +2.8
567,806 - GFF525 0.44 -0.1
567,806 - GFF525 0.44 -1.4
567,806 - GFF525 0.44 -0.2
567,806 - GFF525 0.44 -0.1
567,806 - GFF525 0.44 +0.1
567,982 + GFF525 0.62 -0.5
567,982 + GFF525 0.62 -0.5
567,982 + GFF525 0.62 -0.9
567,982 + GFF525 0.62 +0.1
567,982 + GFF525 0.62 -0.2
567,982 + GFF525 0.62 -0.3
567,982 + GFF525 0.62 -0.2
567,983 - GFF525 0.62 +1.2
567,983 - GFF525 0.62 -0.1
567,983 - GFF525 0.62 -0.6
568,159 + GFF525 0.80 +0.3
568,159 + GFF525 0.80 -0.4
568,160 - GFF525 0.81 +0.6
568,160 - GFF525 0.81 +1.3

Or see this region's nucleotide sequence