Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4907 and GFF4908 are separated by 30 nucleotides GFF4908 and GFF4909 are separated by 443 nucleotides
GFF4907 - NAD(P) transhydrogenase C-domain of subunit alpha (EC 1.6.1.2), at 49 to 387
GFF4907
GFF4908 - NAD(P) transhydrogenase N-domain of subunit alpha (EC 1.6.1.2), at 418 to 1,548
GFF4908
GFF4909 - Two-component transcriptional response regulator, OmpR family, at 1,992 to 2,708
GFF4909
Position (kb) 0
1
2 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 0.024 kb on + strand at 0.024 kb on + strand at 0.024 kb on + strand at 0.024 kb on + strand at 0.024 kb on + strand at 0.024 kb on + strand at 0.024 kb on + strand at 0.025 kb on - strand at 0.025 kb on - strand at 0.025 kb on - strand at 0.025 kb on - strand at 0.025 kb on - strand at 0.025 kb on - strand at 0.081 kb on + strand at 0.081 kb on + strand at 0.081 kb on + strand at 0.081 kb on + strand at 0.081 kb on + strand at 0.082 kb on - strand at 0.082 kb on - strand at 0.323 kb on + strand, within GFF4907 at 0.323 kb on + strand, within GFF4907 at 0.324 kb on - strand, within GFF4907 at 0.332 kb on + strand, within GFF4907 at 0.332 kb on + strand, within GFF4907 at 0.332 kb on + strand, within GFF4907 at 0.332 kb on + strand, within GFF4907 at 0.332 kb on + strand, within GFF4907 at 0.332 kb on + strand, within GFF4907 at 0.332 kb on + strand, within GFF4907 at 0.332 kb on + strand, within GFF4907 at 0.332 kb on + strand, within GFF4907 at 0.332 kb on + strand, within GFF4907 at 0.332 kb on + strand, within GFF4907 at 0.332 kb on + strand, within GFF4907 at 0.333 kb on - strand, within GFF4907 at 0.333 kb on - strand, within GFF4907 at 0.333 kb on - strand, within GFF4907 at 0.333 kb on - strand, within GFF4907 at 0.333 kb on - strand, within GFF4907 at 0.333 kb on - strand, within GFF4907 at 0.333 kb on - strand, within GFF4907 at 0.333 kb on - strand, within GFF4907 at 0.333 kb on - strand, within GFF4907 at 0.333 kb on - strand, within GFF4907 at 0.333 kb on - strand, within GFF4907 at 0.333 kb on - strand, within GFF4907 at 0.333 kb on - strand, within GFF4907 at 0.333 kb on - strand, within GFF4907 at 0.333 kb on - strand, within GFF4907 at 0.333 kb on - strand, within GFF4907 at 0.333 kb on - strand, within GFF4907 at 0.333 kb on - strand, within GFF4907 at 0.333 kb on - strand, within GFF4907 at 0.333 kb on - strand, within GFF4907 at 0.333 kb on - strand, within GFF4907 at 0.333 kb on - strand, within GFF4907 at 0.333 kb on - strand, within GFF4907 at 0.370 kb on - strand at 0.376 kb on + strand at 0.419 kb on + strand at 0.419 kb on + strand at 0.419 kb on + strand at 0.419 kb on + strand at 0.419 kb on + strand at 0.419 kb on + strand at 0.419 kb on + strand at 0.419 kb on + strand at 0.419 kb on + strand at 0.419 kb on + strand at 0.419 kb on + strand at 0.419 kb on + strand at 0.419 kb on + strand at 0.419 kb on + strand at 0.420 kb on - strand at 0.420 kb on - strand at 0.420 kb on - strand at 0.420 kb on - strand at 0.420 kb on - strand at 0.420 kb on - strand at 0.545 kb on + strand, within GFF4908 at 0.545 kb on + strand, within GFF4908 at 0.545 kb on + strand, within GFF4908 at 0.545 kb on + strand, within GFF4908 at 0.546 kb on - strand, within GFF4908 at 0.546 kb on - strand, within GFF4908 at 0.546 kb on - strand, within GFF4908 at 0.546 kb on - strand, within GFF4908 at 0.546 kb on - strand, within GFF4908 at 0.546 kb on - strand, within GFF4908 at 0.905 kb on + strand, within GFF4908 at 0.905 kb on + strand, within GFF4908 at 0.905 kb on + strand, within GFF4908 at 0.905 kb on + strand, within GFF4908 at 0.905 kb on + strand, within GFF4908 at 0.906 kb on - strand, within GFF4908 at 0.906 kb on - strand, within GFF4908 at 0.906 kb on - strand, within GFF4908 at 0.906 kb on - strand, within GFF4908 at 1.106 kb on + strand, within GFF4908 at 1.106 kb on + strand, within GFF4908 at 1.106 kb on + strand, within GFF4908 at 1.106 kb on + strand, within GFF4908 at 1.106 kb on + strand, within GFF4908 at 1.106 kb on + strand, within GFF4908 at 1.106 kb on + strand, within GFF4908 at 1.107 kb on - strand, within GFF4908 at 1.107 kb on - strand, within GFF4908 at 1.107 kb on - strand, within GFF4908 at 1.107 kb on - strand, within GFF4908 at 1.107 kb on - strand, within GFF4908 at 1.107 kb on - strand, within GFF4908 at 1.107 kb on - strand, within GFF4908 at 1.107 kb on - strand, within GFF4908 at 1.107 kb on - strand, within GFF4908 at 1.107 kb on - strand, within GFF4908 at 1.107 kb on - strand, within GFF4908 at 1.107 kb on - strand, within GFF4908 at 1.107 kb on - strand, within GFF4908 at 1.107 kb on - strand, within GFF4908 at 1.107 kb on - strand, within GFF4908 at 1.107 kb on - strand, within GFF4908 at 1.107 kb on - strand, within GFF4908 at 1.107 kb on - strand, within GFF4908 at 1.107 kb on - strand, within GFF4908 at 1.107 kb on - strand, within GFF4908 at 1.136 kb on + strand, within GFF4908 at 1.136 kb on + strand, within GFF4908 at 1.136 kb on + strand, within GFF4908 at 1.136 kb on + strand, within GFF4908 at 1.136 kb on + strand, within GFF4908 at 1.137 kb on - strand, within GFF4908 at 1.137 kb on - strand, within GFF4908 at 1.137 kb on - strand, within GFF4908 at 1.400 kb on + strand, within GFF4908 at 1.401 kb on - strand, within GFF4908 at 1.401 kb on - strand, within GFF4908 at 1.401 kb on - strand, within GFF4908 at 1.401 kb on - strand, within GFF4908 at 1.496 kb on - strand at 1.496 kb on - strand at 1.496 kb on - strand at 1.496 kb on - strand at 1.540 kb on + strand at 1.540 kb on + strand at 1.540 kb on + strand at 1.540 kb on + strand at 1.540 kb on + strand at 1.548 kb on + strand at 1.548 kb on + strand at 1.548 kb on + strand at 1.548 kb on + strand at 1.548 kb on + strand at 1.548 kb on + strand at 1.548 kb on + strand at 1.548 kb on + strand at 1.548 kb on + strand at 1.548 kb on + strand at 1.548 kb on + strand at 1.596 kb on + strand at 1.596 kb on + strand at 1.596 kb on + strand at 1.596 kb on + strand at 1.596 kb on + strand at 1.596 kb on + strand at 1.596 kb on + strand at 1.596 kb on + strand at 1.596 kb on + strand at 1.596 kb on + strand at 1.596 kb on + strand at 1.596 kb on + strand at 1.597 kb on - strand at 1.597 kb on - strand at 1.597 kb on - strand at 1.597 kb on - strand at 1.597 kb on - strand at 1.597 kb on - strand at 1.597 kb on - strand at 1.597 kb on - strand at 1.597 kb on - strand at 1.607 kb on + strand at 1.607 kb on + strand at 1.607 kb on + strand at 1.607 kb on + strand at 1.608 kb on - strand at 1.608 kb on - strand at 1.608 kb on - strand at 1.627 kb on + strand at 1.673 kb on + strand at 1.673 kb on + strand at 1.673 kb on + strand at 1.673 kb on + strand at 1.673 kb on + strand at 1.674 kb on - strand at 1.681 kb on - strand at 1.681 kb on - strand at 1.712 kb on - strand at 1.779 kb on + strand at 1.779 kb on + strand at 1.780 kb on - strand at 1.802 kb on + strand at 1.802 kb on + strand at 1.803 kb on - strand at 1.817 kb on - strand at 1.819 kb on + strand at 1.844 kb on - strand at 1.844 kb on - strand at 1.847 kb on + strand at 1.847 kb on + strand at 1.848 kb on - strand at 1.854 kb on + strand at 1.855 kb on - strand at 1.857 kb on + strand at 1.857 kb on + strand at 1.857 kb on + strand at 1.882 kb on - strand at 1.891 kb on + strand at 1.891 kb on + strand at 1.891 kb on + strand at 1.891 kb on + strand at 1.891 kb on + strand at 1.891 kb on + strand at 1.892 kb on - strand at 1.930 kb on + strand at 1.931 kb on - strand at 1.945 kb on - strand at 1.945 kb on - strand at 1.997 kb on + strand at 1.997 kb on + strand at 1.997 kb on + strand at 1.997 kb on + strand at 1.997 kb on + strand at 1.997 kb on + strand at 1.997 kb on + strand at 1.997 kb on + strand at 1.997 kb on + strand at 1.998 kb on - strand at 1.998 kb on - strand at 1.998 kb on - strand at 1.998 kb on - strand at 1.998 kb on - strand at 1.998 kb on - strand at 1.998 kb on - strand at 1.998 kb on - strand at 1.998 kb on - strand at 1.998 kb on - strand at 1.998 kb on - strand at 1.998 kb on - strand at 2.005 kb on + strand at 2.005 kb on + strand at 2.006 kb on - strand at 2.006 kb on - strand at 2.006 kb on - strand at 2.006 kb on - strand at 2.006 kb on - strand at 2.137 kb on + strand, within GFF4909 at 2.137 kb on + strand, within GFF4909 at 2.137 kb on + strand, within GFF4909 at 2.137 kb on + strand, within GFF4909 at 2.137 kb on + strand, within GFF4909 at 2.137 kb on + strand, within GFF4909 at 2.138 kb on - strand, within GFF4909 at 2.138 kb on - strand, within GFF4909 at 2.138 kb on - strand, within GFF4909 at 2.138 kb on - strand, within GFF4909 at 2.138 kb on - strand, within GFF4909 at 2.138 kb on - strand, within GFF4909 at 2.302 kb on + strand, within GFF4909 at 2.352 kb on + strand, within GFF4909 at 2.352 kb on + strand, within GFF4909 at 2.352 kb on + strand, within GFF4909 at 2.352 kb on + strand, within GFF4909 at 2.353 kb on - strand, within GFF4909 at 2.353 kb on - strand, within GFF4909 at 2.391 kb on + strand, within GFF4909 at 2.391 kb on + strand, within GFF4909 at 2.391 kb on + strand, within GFF4909 at 2.392 kb on - strand, within GFF4909 at 2.392 kb on - strand, within GFF4909 at 2.400 kb on + strand, within GFF4909 at 2.400 kb on + strand, within GFF4909 at 2.401 kb on - strand, within GFF4909 at 2.460 kb on + strand, within GFF4909 at 2.460 kb on + strand, within GFF4909 at 2.460 kb on + strand, within GFF4909 at 2.461 kb on - strand, within GFF4909 at 2.461 kb on - strand, within GFF4909 at 2.461 kb on - strand, within GFF4909
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL remove 24 + +0.2 24 + -0.0 24 + -1.0 24 + -0.3 24 + -0.2 24 + -0.7 24 + -0.9 25 - +1.1 25 - -2.3 25 - +0.4 25 - +0.1 25 - -0.0 25 - +0.2 81 + -0.3 81 + -0.2 81 + +0.3 81 + +1.1 81 + +0.4 82 - -0.9 82 - -0.0 323 + GFF4907 0.81 +0.9 323 + GFF4907 0.81 -0.0 324 - GFF4907 0.81 -2.0 332 + GFF4907 0.83 -0.7 332 + GFF4907 0.83 -0.3 332 + GFF4907 0.83 -0.6 332 + GFF4907 0.83 -0.4 332 + GFF4907 0.83 +1.0 332 + GFF4907 0.83 -0.7 332 + GFF4907 0.83 +0.1 332 + GFF4907 0.83 +0.3 332 + GFF4907 0.83 +0.2 332 + GFF4907 0.83 -0.1 332 + GFF4907 0.83 +0.3 332 + GFF4907 0.83 -0.0 333 - GFF4907 0.84 +0.4 333 - GFF4907 0.84 -0.9 333 - GFF4907 0.84 +0.9 333 - GFF4907 0.84 +0.1 333 - GFF4907 0.84 -0.2 333 - GFF4907 0.84 +0.4 333 - GFF4907 0.84 +0.8 333 - GFF4907 0.84 +0.9 333 - GFF4907 0.84 +0.5 333 - GFF4907 0.84 +0.4 333 - GFF4907 0.84 -0.3 333 - GFF4907 0.84 +0.1 333 - GFF4907 0.84 +0.1 333 - GFF4907 0.84 -0.3 333 - GFF4907 0.84 +0.1 333 - GFF4907 0.84 +0.5 333 - GFF4907 0.84 -1.3 333 - GFF4907 0.84 +0.6 333 - GFF4907 0.84 -0.0 333 - GFF4907 0.84 +2.2 333 - GFF4907 0.84 +0.9 333 - GFF4907 0.84 +2.3 333 - GFF4907 0.84 -2.5 370 - -1.3 376 + -0.1 419 + -0.2 419 + +0.3 419 + -0.6 419 + -0.3 419 + +0.0 419 + -0.1 419 + +1.2 419 + -0.2 419 + -0.7 419 + +0.3 419 + +0.0 419 + +0.7 419 + -0.6 419 + -0.4 420 - +0.9 420 - -0.5 420 - +0.3 420 - +0.2 420 - -1.2 420 - -0.9 545 + GFF4908 0.11 -0.9 545 + GFF4908 0.11 -1.1 545 + GFF4908 0.11 -1.1 545 + GFF4908 0.11 -1.0 546 - GFF4908 0.11 -0.1 546 - GFF4908 0.11 -1.2 546 - GFF4908 0.11 -0.4 546 - GFF4908 0.11 -0.8 546 - GFF4908 0.11 +0.2 546 - GFF4908 0.11 +0.1 905 + GFF4908 0.43 -0.7 905 + GFF4908 0.43 -0.6 905 + GFF4908 0.43 -0.4 905 + GFF4908 0.43 -0.0 905 + GFF4908 0.43 -0.5 906 - GFF4908 0.43 +1.3 906 - GFF4908 0.43 -1.3 906 - GFF4908 0.43 -1.3 906 - GFF4908 0.43 -0.4 1,106 + GFF4908 0.61 -0.7 1,106 + GFF4908 0.61 +0.3 1,106 + GFF4908 0.61 -1.4 1,106 + GFF4908 0.61 -0.9 1,106 + GFF4908 0.61 +0.3 1,106 + GFF4908 0.61 +0.1 1,106 + GFF4908 0.61 -1.0 1,107 - GFF4908 0.61 +2.5 1,107 - GFF4908 0.61 -0.9 1,107 - GFF4908 0.61 +0.3 1,107 - GFF4908 0.61 -1.4 1,107 - GFF4908 0.61 -0.6 1,107 - GFF4908 0.61 +0.0 1,107 - GFF4908 0.61 -3.1 1,107 - GFF4908 0.61 -0.9 1,107 - GFF4908 0.61 -0.8 1,107 - GFF4908 0.61 +1.1 1,107 - GFF4908 0.61 +0.2 1,107 - GFF4908 0.61 -1.1 1,107 - GFF4908 0.61 +0.7 1,107 - GFF4908 0.61 -0.8 1,107 - GFF4908 0.61 -1.2 1,107 - GFF4908 0.61 +0.9 1,107 - GFF4908 0.61 -1.7 1,107 - GFF4908 0.61 -0.6 1,107 - GFF4908 0.61 +0.1 1,107 - GFF4908 0.61 +0.6 1,136 + GFF4908 0.63 +0.2 1,136 + GFF4908 0.63 +0.9 1,136 + GFF4908 0.63 +0.2 1,136 + GFF4908 0.63 -0.0 1,136 + GFF4908 0.63 +1.1 1,137 - GFF4908 0.64 -0.4 1,137 - GFF4908 0.64 -0.8 1,137 - GFF4908 0.64 -0.7 1,400 + GFF4908 0.87 +0.2 1,401 - GFF4908 0.87 -0.1 1,401 - GFF4908 0.87 +0.3 1,401 - GFF4908 0.87 -2.2 1,401 - GFF4908 0.87 -0.9 1,496 - +0.1 1,496 - -0.3 1,496 - -0.4 1,496 - -0.2 1,540 + +0.3 1,540 + -0.5 1,540 + -0.8 1,540 + -0.9 1,540 + -2.3 1,548 + +0.1 1,548 + -0.6 1,548 + -0.7 1,548 + +0.0 1,548 + -1.7 1,548 + -0.0 1,548 + -1.4 1,548 + -0.3 1,548 + -0.3 1,548 + +0.2 1,548 + +0.1 1,596 + -0.0 1,596 + +0.1 1,596 + +0.8 1,596 + +0.9 1,596 + -0.6 1,596 + -2.1 1,596 + -0.4 1,596 + +0.6 1,596 + -0.1 1,596 + -0.2 1,596 + -1.0 1,596 + -1.0 1,597 - +0.5 1,597 - -0.9 1,597 - -0.9 1,597 - -0.4 1,597 - -0.1 1,597 - +0.3 1,597 - -0.7 1,597 - -0.2 1,597 - +0.0 1,607 + -0.5 1,607 + +1.2 1,607 + +0.7 1,607 + +0.3 1,608 - -0.5 1,608 - +0.5 1,608 - -0.1 1,627 + -1.1 1,673 + +2.6 1,673 + +1.9 1,673 + -0.0 1,673 + -0.9 1,673 + -0.2 1,674 - -0.3 1,681 - +0.8 1,681 - +0.3 1,712 - -0.2 1,779 + +0.2 1,779 + -0.2 1,780 - +0.1 1,802 + +0.1 1,802 + +0.0 1,803 - -0.0 1,817 - -0.8 1,819 + -2.3 1,844 - +0.3 1,844 - -0.4 1,847 + +0.2 1,847 + +0.8 1,848 - +0.3 1,854 + -0.1 1,855 - -1.7 1,857 + +0.1 1,857 + +0.1 1,857 + +0.7 1,882 - +1.3 1,891 + -0.3 1,891 + -0.1 1,891 + -0.5 1,891 + +0.4 1,891 + -0.5 1,891 + -0.4 1,892 - -0.6 1,930 + +0.1 1,931 - +0.5 1,945 - +0.3 1,945 - -0.0 1,997 + +1.1 1,997 + -0.2 1,997 + -0.4 1,997 + -0.4 1,997 + -0.4 1,997 + +1.1 1,997 + +1.0 1,997 + +0.9 1,997 + -0.9 1,998 - -0.2 1,998 - +0.1 1,998 - +0.9 1,998 - -0.3 1,998 - +0.6 1,998 - -0.5 1,998 - +1.9 1,998 - -1.6 1,998 - -1.3 1,998 - +0.5 1,998 - +0.0 1,998 - -0.2 2,005 + -0.9 2,005 + -0.1 2,006 - -0.2 2,006 - +0.3 2,006 - -0.1 2,006 - -0.4 2,006 - -1.1 2,137 + GFF4909 0.20 +0.3 2,137 + GFF4909 0.20 -0.9 2,137 + GFF4909 0.20 +1.9 2,137 + GFF4909 0.20 +0.1 2,137 + GFF4909 0.20 +0.1 2,137 + GFF4909 0.20 +0.1 2,138 - GFF4909 0.20 -0.7 2,138 - GFF4909 0.20 +0.7 2,138 - GFF4909 0.20 +0.9 2,138 - GFF4909 0.20 +0.0 2,138 - GFF4909 0.20 -0.2 2,138 - GFF4909 0.20 -0.3 2,302 + GFF4909 0.43 -0.9 2,352 + GFF4909 0.50 -1.4 2,352 + GFF4909 0.50 -0.7 2,352 + GFF4909 0.50 -0.0 2,352 + GFF4909 0.50 -1.8 2,353 - GFF4909 0.50 +1.4 2,353 - GFF4909 0.50 -0.9 2,391 + GFF4909 0.56 +0.9 2,391 + GFF4909 0.56 -0.3 2,391 + GFF4909 0.56 -1.6 2,392 - GFF4909 0.56 -0.7 2,392 - GFF4909 0.56 +0.4 2,400 + GFF4909 0.57 -0.4 2,400 + GFF4909 0.57 +0.2 2,401 - GFF4909 0.57 +0.6 2,460 + GFF4909 0.65 +0.0 2,460 + GFF4909 0.65 -0.2 2,460 + GFF4909 0.65 -0.0 2,461 - GFF4909 0.65 +0.0 2,461 - GFF4909 0.65 -0.5 2,461 - GFF4909 0.65 -1.2
Or see this region's nucleotide sequence