Strain Fitness in Variovorax sp. SCN45 around GFF4201

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
115,833	+		GFF4200	0.43	+0.5
115,833	+		GFF4200	0.43	-0.5
115,833	+		GFF4200	0.43	-0.1
115,833	+		GFF4200	0.43	-0.4
115,833	+		GFF4200	0.43	-0.2
115,834	-		GFF4200	0.43	+0.6
115,834	-		GFF4200	0.43	+0.1
115,834	-		GFF4200	0.43	-0.7
115,834	-		GFF4200	0.43	+0.6
115,834	-		GFF4200	0.43	-0.1
115,847	+		GFF4200	0.44	-1.7
115,847	+		GFF4200	0.44	+0.3
116,412	+				-1.0
116,412	+				-0.7
116,412	+				+0.0
116,412	+				+0.0
116,413	-				-0.6
116,413	-				-0.6
116,413	-				-0.1
116,413	-				-1.3
116,413	-				-1.0
116,413	-				+0.1
116,415	-				+0.0
116,946	+		GFF4201	0.40	-0.5
116,947	-		GFF4201	0.40	+1.4
117,291	+		GFF4201	0.71	-0.4
117,291	+		GFF4201	0.71	-2.9
117,291	+		GFF4201	0.71	-0.5
117,291	+		GFF4201	0.71	-1.9
117,291	+		GFF4201	0.71	-1.0
117,292	-		GFF4201	0.71	-0.5
118,109	+		GFF4202	0.65	-0.2
118,109	+		GFF4202	0.65	-0.4
118,110	-		GFF4202	0.65	+0.4
118,358	+				-1.0
118,358	+				-0.7
118,358	+				+0.4
118,497	+				-0.6
118,498	-				-1.1
118,498	-				+0.8
118,498	-				-0.3
118,503	+				+0.4