Strain Fitness in Variovorax sp. SCN45 around GFF4149

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
54,570	-		GFF4148	0.47	+0.7
54,601	-		GFF4148	0.50	-0.4
54,834	-		GFF4148	0.74	-0.5
54,834	-		GFF4148	0.74	+0.1
54,900	-		GFF4148	0.80	-0.9
54,942	-		GFF4148	0.84	+0.0
54,942	-		GFF4148	0.84	-0.6
54,942	-		GFF4148	0.84	+0.1
54,950	+		GFF4148	0.85	-0.1
54,950	+		GFF4148	0.85	-0.0
54,951	-		GFF4148	0.85	-1.5
54,951	-		GFF4148	0.85	-0.1
54,951	-		GFF4148	0.85	+0.4
55,162	+				+0.1
55,422	+		GFF4149	0.24	-0.6
55,423	-		GFF4149	0.24	-0.7
55,430	+		GFF4149	0.25	-0.7
55,431	-		GFF4149	0.25	-0.9
55,431	-		GFF4149	0.25	+0.3
56,133	+				+0.4
56,201	-				+0.3
56,282	+				-0.6
56,282	+				-0.2
56,282	+				+1.0
56,283	-				-0.6
56,283	-				-0.7
56,335	-				+0.7
56,667	+		GFF4150	0.17	+0.3
56,667	+		GFF4150	0.17	+1.1
56,668	-		GFF4150	0.18	-1.0
56,668	-		GFF4150	0.18	-0.0
56,736	+		GFF4150	0.23	+0.6
56,736	+		GFF4150	0.23	-0.0
56,963	-		GFF4150	0.41	-0.9