Strain Fitness in Variovorax sp. SCN45 around GFF3590

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3589 and GFF3590 are separated by 28 nucleotidesGFF3590 and GFF3591 are separated by 0 nucleotides GFF3589 - Transcriptional regulator, LysR family, at 100,250 to 101,164 GFF3589 GFF3590 - 2-dehydropantoate 2-reductase (EC 1.1.1.169), at 101,193 to 102,107 GFF3590 GFF3591 - Glutathione reductase (EC 1.8.1.7), at 102,108 to 103,466 GFF3591 Position (kb) 101 102 103Strain fitness (log2 ratio) -2 -1 0 1at 100.454 kb on + strand, within GFF3589at 100.454 kb on + strand, within GFF3589at 100.454 kb on + strand, within GFF3589at 100.455 kb on - strand, within GFF3589at 100.691 kb on + strand, within GFF3589at 100.727 kb on + strand, within GFF3589at 100.727 kb on + strand, within GFF3589at 100.727 kb on + strand, within GFF3589at 100.727 kb on + strand, within GFF3589at 100.728 kb on - strand, within GFF3589at 100.728 kb on - strand, within GFF3589at 100.728 kb on - strand, within GFF3589at 100.922 kb on + strand, within GFF3589at 100.922 kb on + strand, within GFF3589at 100.923 kb on - strand, within GFF3589at 100.923 kb on - strand, within GFF3589at 101.057 kb on + strand, within GFF3589at 101.057 kb on + strand, within GFF3589at 101.057 kb on + strand, within GFF3589at 101.058 kb on - strand, within GFF3589at 101.058 kb on - strand, within GFF3589at 101.058 kb on - strand, within GFF3589at 101.058 kb on - strand, within GFF3589at 101.058 kb on - strand, within GFF3589at 101.058 kb on - strand, within GFF3589at 101.058 kb on - strand, within GFF3589at 101.058 kb on - strand, within GFF3589at 101.232 kb on + strandat 101.232 kb on + strandat 101.232 kb on + strandat 101.232 kb on + strandat 101.232 kb on + strandat 101.233 kb on - strandat 101.233 kb on - strandat 101.235 kb on + strandat 101.235 kb on + strandat 101.568 kb on + strand, within GFF3590at 101.568 kb on + strand, within GFF3590at 101.568 kb on + strand, within GFF3590at 101.568 kb on + strand, within GFF3590at 101.569 kb on - strand, within GFF3590at 101.569 kb on - strand, within GFF3590at 101.569 kb on - strand, within GFF3590at 101.569 kb on - strand, within GFF3590at 101.751 kb on + strand, within GFF3590at 101.752 kb on - strand, within GFF3590at 101.752 kb on - strand, within GFF3590at 101.752 kb on - strand, within GFF3590at 101.752 kb on - strand, within GFF3590at 101.752 kb on - strand, within GFF3590at 101.752 kb on - strand, within GFF3590at 101.753 kb on + strand, within GFF3590at 101.934 kb on + strand, within GFF3590at 101.934 kb on + strand, within GFF3590at 101.935 kb on - strand, within GFF3590at 102.409 kb on + strand, within GFF3591at 102.409 kb on + strand, within GFF3591at 102.463 kb on + strand, within GFF3591at 102.571 kb on + strand, within GFF3591at 102.571 kb on + strand, within GFF3591at 102.572 kb on - strand, within GFF3591at 102.572 kb on - strand, within GFF3591at 102.935 kb on - strand, within GFF3591

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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100,454 + GFF3589 0.22 -0.2
100,454 + GFF3589 0.22 -0.0
100,454 + GFF3589 0.22 -0.2
100,455 - GFF3589 0.22 +0.8
100,691 + GFF3589 0.48 +0.5
100,727 + GFF3589 0.52 +0.2
100,727 + GFF3589 0.52 -1.1
100,727 + GFF3589 0.52 -0.3
100,727 + GFF3589 0.52 -0.7
100,728 - GFF3589 0.52 +1.5
100,728 - GFF3589 0.52 -1.0
100,728 - GFF3589 0.52 +0.5
100,922 + GFF3589 0.73 +0.1
100,922 + GFF3589 0.73 +1.3
100,923 - GFF3589 0.74 -0.4
100,923 - GFF3589 0.74 -0.0
101,057 + GFF3589 0.88 -1.3
101,057 + GFF3589 0.88 +0.4
101,057 + GFF3589 0.88 +0.3
101,058 - GFF3589 0.88 -0.1
101,058 - GFF3589 0.88 -0.5
101,058 - GFF3589 0.88 -1.1
101,058 - GFF3589 0.88 -0.1
101,058 - GFF3589 0.88 -0.5
101,058 - GFF3589 0.88 +0.2
101,058 - GFF3589 0.88 -0.5
101,058 - GFF3589 0.88 -0.1
101,232 + +0.3
101,232 + -0.3
101,232 + -1.8
101,232 + +0.5
101,232 + -0.5
101,233 - +0.0
101,233 - +1.3
101,235 + +0.5
101,235 + -1.1
101,568 + GFF3590 0.41 -1.3
101,568 + GFF3590 0.41 +0.5
101,568 + GFF3590 0.41 -0.7
101,568 + GFF3590 0.41 +0.5
101,569 - GFF3590 0.41 -0.9
101,569 - GFF3590 0.41 -0.5
101,569 - GFF3590 0.41 -0.6
101,569 - GFF3590 0.41 -0.3
101,751 + GFF3590 0.61 -1.1
101,752 - GFF3590 0.61 -0.1
101,752 - GFF3590 0.61 +1.2
101,752 - GFF3590 0.61 +0.1
101,752 - GFF3590 0.61 -1.1
101,752 - GFF3590 0.61 -0.1
101,752 - GFF3590 0.61 -1.3
101,753 + GFF3590 0.61 -0.8
101,934 + GFF3590 0.81 -0.1
101,934 + GFF3590 0.81 -1.2
101,935 - GFF3590 0.81 -0.0
102,409 + GFF3591 0.22 -0.5
102,409 + GFF3591 0.22 -0.6
102,463 + GFF3591 0.26 +0.4
102,571 + GFF3591 0.34 -0.5
102,571 + GFF3591 0.34 -0.3
102,572 - GFF3591 0.34 -0.4
102,572 - GFF3591 0.34 -0.0
102,935 - GFF3591 0.61 -0.5

Or see this region's nucleotide sequence