Strain Fitness in Variovorax sp. SCN45 around GFF3420

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3419 and GFF3420 overlap by 4 nucleotidesGFF3420 and GFF3421 are separated by 100 nucleotides GFF3419 - ABC transporter, substrate-binding protein (cluster 10, nitrate/sulfonate/bicarbonate), at 242,576 to 243,535 GFF3419 GFF3420 - Transcriptional regulator, AcrR family, at 243,532 to 244,284 GFF3420 GFF3421 - Acetoacetyl-CoA synthetase (EC 6.2.1.16), at 244,385 to 246,388 GFF3421 Position (kb) 243 244 245Strain fitness (log2 ratio) -2 -1 0 1 2 3at 242.730 kb on + strand, within GFF3419at 242.730 kb on + strand, within GFF3419at 242.730 kb on + strand, within GFF3419at 242.730 kb on + strand, within GFF3419at 242.730 kb on + strand, within GFF3419at 242.731 kb on - strand, within GFF3419at 242.731 kb on - strand, within GFF3419at 242.731 kb on - strand, within GFF3419at 242.905 kb on - strand, within GFF3419at 243.042 kb on + strand, within GFF3419at 243.117 kb on + strand, within GFF3419at 243.369 kb on + strand, within GFF3419at 243.369 kb on + strand, within GFF3419at 243.370 kb on - strand, within GFF3419at 243.370 kb on - strand, within GFF3419at 243.797 kb on + strand, within GFF3420at 243.798 kb on - strand, within GFF3420at 243.798 kb on - strand, within GFF3420at 243.798 kb on - strand, within GFF3420at 243.821 kb on + strand, within GFF3420at 243.860 kb on + strand, within GFF3420at 243.860 kb on + strand, within GFF3420at 243.860 kb on + strand, within GFF3420at 243.887 kb on + strand, within GFF3420at 243.888 kb on - strand, within GFF3420at 243.891 kb on - strand, within GFF3420at 244.070 kb on + strand, within GFF3420at 244.070 kb on + strand, within GFF3420at 244.071 kb on - strand, within GFF3420at 244.073 kb on + strand, within GFF3420at 244.073 kb on + strand, within GFF3420at 244.073 kb on + strand, within GFF3420at 244.073 kb on + strand, within GFF3420at 244.073 kb on + strand, within GFF3420at 244.073 kb on + strand, within GFF3420at 244.073 kb on + strand, within GFF3420at 244.074 kb on - strand, within GFF3420at 244.074 kb on - strand, within GFF3420at 244.074 kb on - strand, within GFF3420at 244.074 kb on - strand, within GFF3420at 244.074 kb on - strand, within GFF3420at 244.074 kb on - strand, within GFF3420at 244.074 kb on - strand, within GFF3420at 244.074 kb on - strand, within GFF3420at 244.076 kb on + strand, within GFF3420at 244.077 kb on - strand, within GFF3420at 244.373 kb on + strandat 244.374 kb on - strandat 244.384 kb on + strandat 244.384 kb on + strandat 244.384 kb on + strandat 244.384 kb on + strandat 244.418 kb on + strandat 244.419 kb on - strandat 244.463 kb on + strandat 244.463 kb on + strandat 244.464 kb on - strandat 244.464 kb on - strandat 244.464 kb on - strandat 244.464 kb on - strandat 244.526 kb on + strandat 244.526 kb on + strandat 244.526 kb on + strandat 244.526 kb on + strandat 244.527 kb on - strandat 244.628 kb on + strand, within GFF3421at 244.629 kb on - strand, within GFF3421at 244.629 kb on - strand, within GFF3421at 244.811 kb on + strand, within GFF3421at 244.811 kb on + strand, within GFF3421at 244.811 kb on + strand, within GFF3421at 244.811 kb on + strand, within GFF3421at 244.812 kb on - strand, within GFF3421at 244.812 kb on - strand, within GFF3421at 244.812 kb on - strand, within GFF3421at 244.812 kb on - strand, within GFF3421at 244.812 kb on - strand, within GFF3421at 244.812 kb on - strand, within GFF3421at 244.970 kb on + strand, within GFF3421at 245.183 kb on + strand, within GFF3421

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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242,730 + GFF3419 0.16 +0.4
242,730 + GFF3419 0.16 +0.5
242,730 + GFF3419 0.16 -0.4
242,730 + GFF3419 0.16 +3.0
242,730 + GFF3419 0.16 +0.6
242,731 - GFF3419 0.16 +0.5
242,731 - GFF3419 0.16 -0.1
242,731 - GFF3419 0.16 -1.9
242,905 - GFF3419 0.34 -0.0
243,042 + GFF3419 0.49 -0.2
243,117 + GFF3419 0.56 -0.0
243,369 + GFF3419 0.83 -0.0
243,369 + GFF3419 0.83 -1.0
243,370 - GFF3419 0.83 +0.1
243,370 - GFF3419 0.83 +1.3
243,797 + GFF3420 0.35 -0.7
243,798 - GFF3420 0.35 -1.0
243,798 - GFF3420 0.35 -0.5
243,798 - GFF3420 0.35 -0.5
243,821 + GFF3420 0.38 -0.0
243,860 + GFF3420 0.44 -0.5
243,860 + GFF3420 0.44 +0.3
243,860 + GFF3420 0.44 -0.6
243,887 + GFF3420 0.47 -1.5
243,888 - GFF3420 0.47 -0.8
243,891 - GFF3420 0.48 -0.3
244,070 + GFF3420 0.71 +0.4
244,070 + GFF3420 0.71 -0.8
244,071 - GFF3420 0.72 -0.7
244,073 + GFF3420 0.72 -0.5
244,073 + GFF3420 0.72 -1.8
244,073 + GFF3420 0.72 -0.7
244,073 + GFF3420 0.72 -0.7
244,073 + GFF3420 0.72 -2.2
244,073 + GFF3420 0.72 -0.2
244,073 + GFF3420 0.72 +0.3
244,074 - GFF3420 0.72 -0.5
244,074 - GFF3420 0.72 -1.0
244,074 - GFF3420 0.72 +0.4
244,074 - GFF3420 0.72 -0.6
244,074 - GFF3420 0.72 -0.4
244,074 - GFF3420 0.72 +0.6
244,074 - GFF3420 0.72 +0.5
244,074 - GFF3420 0.72 +0.4
244,076 + GFF3420 0.72 -1.6
244,077 - GFF3420 0.72 -0.0
244,373 + +1.0
244,374 - -1.0
244,384 + +0.4
244,384 + -1.6
244,384 + +0.2
244,384 + -1.1
244,418 + -0.0
244,419 - +0.4
244,463 + -0.4
244,463 + -0.2
244,464 - +0.2
244,464 - +0.2
244,464 - +1.0
244,464 - -0.1
244,526 + -0.1
244,526 + +0.6
244,526 + -0.1
244,526 + +0.0
244,527 - -0.2
244,628 + GFF3421 0.12 +0.5
244,629 - GFF3421 0.12 -0.6
244,629 - GFF3421 0.12 -0.0
244,811 + GFF3421 0.21 -0.3
244,811 + GFF3421 0.21 +2.0
244,811 + GFF3421 0.21 +1.4
244,811 + GFF3421 0.21 -0.9
244,812 - GFF3421 0.21 -1.8
244,812 - GFF3421 0.21 -0.8
244,812 - GFF3421 0.21 +0.1
244,812 - GFF3421 0.21 -1.3
244,812 - GFF3421 0.21 -0.3
244,812 - GFF3421 0.21 -0.2
244,970 + GFF3421 0.29 +0.6
245,183 + GFF3421 0.40 +0.6

Or see this region's nucleotide sequence