Strain Fitness in Variovorax sp. SCN45 around GFF3209

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF3208 and GFF3209 overlap by 4 nucleotidesGFF3209 and GFF3210 are separated by 22 nucleotides GFF3208 - Transposon Tn7 transposition protein tnsB, at 26,417 to 28,687 GFF3208 GFF3209 - no description, at 28,684 to 30,399 GFF3209 GFF3210 - hypothetical protein, at 30,422 to 31,573 GFF3210 Position (kb) 28 29 30 31Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 27.749 kb on + strand, within GFF3208at 27.792 kb on + strand, within GFF3208at 27.793 kb on - strand, within GFF3208at 27.815 kb on + strand, within GFF3208at 27.816 kb on - strand, within GFF3208at 27.816 kb on - strand, within GFF3208at 27.959 kb on + strand, within GFF3208at 27.959 kb on + strand, within GFF3208at 27.960 kb on - strand, within GFF3208at 28.145 kb on + strand, within GFF3208at 28.145 kb on + strand, within GFF3208at 28.146 kb on - strand, within GFF3208at 28.146 kb on - strand, within GFF3208at 28.146 kb on - strand, within GFF3208at 28.146 kb on - strand, within GFF3208at 28.146 kb on - strand, within GFF3208at 28.146 kb on - strand, within GFF3208at 28.223 kb on + strand, within GFF3208at 28.224 kb on - strand, within GFF3208at 28.250 kb on + strand, within GFF3208at 28.250 kb on + strand, within GFF3208at 28.250 kb on + strand, within GFF3208at 28.251 kb on - strand, within GFF3208at 28.251 kb on - strand, within GFF3208at 28.606 kb on - strandat 28.606 kb on - strandat 28.762 kb on - strandat 28.782 kb on + strandat 28.782 kb on + strandat 28.796 kb on + strandat 28.802 kb on + strandat 28.802 kb on + strandat 28.802 kb on + strandat 28.803 kb on - strandat 28.803 kb on - strandat 28.873 kb on + strand, within GFF3209at 28.873 kb on + strand, within GFF3209at 28.874 kb on - strand, within GFF3209at 28.939 kb on + strand, within GFF3209at 28.940 kb on - strand, within GFF3209at 28.940 kb on - strand, within GFF3209at 29.068 kb on - strand, within GFF3209at 29.068 kb on - strand, within GFF3209at 29.131 kb on + strand, within GFF3209at 29.132 kb on - strand, within GFF3209at 29.132 kb on - strand, within GFF3209at 29.272 kb on + strand, within GFF3209at 29.273 kb on - strand, within GFF3209at 29.273 kb on - strand, within GFF3209at 29.285 kb on - strand, within GFF3209at 29.873 kb on - strand, within GFF3209at 29.893 kb on + strand, within GFF3209at 29.893 kb on + strand, within GFF3209at 29.893 kb on + strand, within GFF3209at 29.894 kb on - strand, within GFF3209at 29.894 kb on - strand, within GFF3209at 29.894 kb on - strand, within GFF3209at 29.927 kb on + strand, within GFF3209at 29.999 kb on + strand, within GFF3209at 30.000 kb on - strand, within GFF3209at 30.000 kb on - strand, within GFF3209at 30.046 kb on - strand, within GFF3209at 30.125 kb on + strand, within GFF3209at 30.125 kb on + strand, within GFF3209at 30.126 kb on - strand, within GFF3209at 30.126 kb on - strand, within GFF3209at 30.401 kb on + strandat 30.431 kb on + strandat 30.431 kb on + strandat 30.431 kb on + strandat 30.431 kb on + strandat 30.431 kb on + strandat 30.431 kb on + strandat 30.431 kb on + strandat 30.432 kb on - strandat 30.432 kb on - strandat 30.432 kb on - strandat 30.432 kb on - strandat 30.432 kb on - strandat 30.464 kb on + strandat 30.465 kb on - strandat 30.585 kb on + strand, within GFF3210at 30.586 kb on - strand, within GFF3210at 30.586 kb on - strand, within GFF3210at 30.586 kb on - strand, within GFF3210at 30.791 kb on + strand, within GFF3210at 30.791 kb on + strand, within GFF3210at 30.904 kb on + strand, within GFF3210at 30.904 kb on + strand, within GFF3210at 30.904 kb on + strand, within GFF3210at 30.904 kb on + strand, within GFF3210at 30.905 kb on - strand, within GFF3210at 30.905 kb on - strand, within GFF3210at 30.905 kb on - strand, within GFF3210at 30.905 kb on - strand, within GFF3210at 30.905 kb on - strand, within GFF3210at 30.905 kb on - strand, within GFF3210at 30.908 kb on + strand, within GFF3210at 30.908 kb on + strand, within GFF3210at 30.908 kb on + strand, within GFF3210at 30.908 kb on + strand, within GFF3210at 30.909 kb on - strand, within GFF3210at 30.909 kb on - strand, within GFF3210at 30.909 kb on - strand, within GFF3210at 30.909 kb on - strand, within GFF3210at 30.909 kb on - strand, within GFF3210at 30.970 kb on + strand, within GFF3210at 30.970 kb on + strand, within GFF3210at 30.970 kb on + strand, within GFF3210at 30.970 kb on + strand, within GFF3210at 30.970 kb on + strand, within GFF3210at 30.971 kb on - strand, within GFF3210at 30.971 kb on - strand, within GFF3210at 30.971 kb on - strand, within GFF3210at 31.094 kb on + strand, within GFF3210at 31.260 kb on - strand, within GFF3210at 31.260 kb on - strand, within GFF3210at 31.283 kb on + strand, within GFF3210at 31.283 kb on + strand, within GFF3210at 31.283 kb on + strand, within GFF3210at 31.283 kb on + strand, within GFF3210at 31.284 kb on - strand, within GFF3210at 31.284 kb on - strand, within GFF3210at 31.284 kb on - strand, within GFF3210at 31.284 kb on - strand, within GFF3210at 31.286 kb on + strand, within GFF3210at 31.286 kb on + strand, within GFF3210at 31.286 kb on + strand, within GFF3210at 31.286 kb on + strand, within GFF3210at 31.286 kb on + strand, within GFF3210at 31.286 kb on + strand, within GFF3210at 31.286 kb on + strand, within GFF3210at 31.286 kb on + strand, within GFF3210at 31.286 kb on + strand, within GFF3210at 31.286 kb on + strand, within GFF3210at 31.286 kb on + strand, within GFF3210at 31.286 kb on + strand, within GFF3210at 31.287 kb on - strand, within GFF3210at 31.287 kb on - strand, within GFF3210at 31.287 kb on - strand, within GFF3210at 31.287 kb on - strand, within GFF3210at 31.307 kb on - strand, within GFF3210

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
remove
27,749 + GFF3208 0.59 -0.7
27,792 + GFF3208 0.61 +0.0
27,793 - GFF3208 0.61 +0.8
27,815 + GFF3208 0.62 +0.5
27,816 - GFF3208 0.62 -0.4
27,816 - GFF3208 0.62 +0.2
27,959 + GFF3208 0.68 +1.6
27,959 + GFF3208 0.68 -0.0
27,960 - GFF3208 0.68 -0.1
28,145 + GFF3208 0.76 -0.6
28,145 + GFF3208 0.76 -2.1
28,146 - GFF3208 0.76 -0.6
28,146 - GFF3208 0.76 -3.7
28,146 - GFF3208 0.76 -0.5
28,146 - GFF3208 0.76 -0.3
28,146 - GFF3208 0.76 +0.4
28,146 - GFF3208 0.76 -0.8
28,223 + GFF3208 0.80 +1.7
28,224 - GFF3208 0.80 -0.3
28,250 + GFF3208 0.81 -0.3
28,250 + GFF3208 0.81 +1.0
28,250 + GFF3208 0.81 +0.1
28,251 - GFF3208 0.81 -0.3
28,251 - GFF3208 0.81 -1.1
28,606 - -1.8
28,606 - -1.1
28,762 - -0.4
28,782 + -1.1
28,782 + +0.2
28,796 + +1.0
28,802 + -0.7
28,802 + +0.3
28,802 + -0.1
28,803 - -0.3
28,803 - -0.7
28,873 + GFF3209 0.11 -0.2
28,873 + GFF3209 0.11 -2.1
28,874 - GFF3209 0.11 -0.5
28,939 + GFF3209 0.15 -0.9
28,940 - GFF3209 0.15 +1.0
28,940 - GFF3209 0.15 +0.2
29,068 - GFF3209 0.22 -1.4
29,068 - GFF3209 0.22 +0.7
29,131 + GFF3209 0.26 -0.5
29,132 - GFF3209 0.26 +0.1
29,132 - GFF3209 0.26 -1.0
29,272 + GFF3209 0.34 -0.0
29,273 - GFF3209 0.34 -0.3
29,273 - GFF3209 0.34 +0.4
29,285 - GFF3209 0.35 -1.9
29,873 - GFF3209 0.69 +0.4
29,893 + GFF3209 0.70 +0.7
29,893 + GFF3209 0.70 -0.3
29,893 + GFF3209 0.70 -0.9
29,894 - GFF3209 0.71 +0.2
29,894 - GFF3209 0.71 +0.1
29,894 - GFF3209 0.71 -1.4
29,927 + GFF3209 0.72 +0.1
29,999 + GFF3209 0.77 -0.6
30,000 - GFF3209 0.77 -0.0
30,000 - GFF3209 0.77 -0.0
30,046 - GFF3209 0.79 +0.2
30,125 + GFF3209 0.84 -0.5
30,125 + GFF3209 0.84 +2.0
30,126 - GFF3209 0.84 -1.4
30,126 - GFF3209 0.84 -0.4
30,401 + +0.7
30,431 + -0.2
30,431 + -1.2
30,431 + -1.4
30,431 + -0.3
30,431 + -0.9
30,431 + +0.8
30,431 + -0.8
30,432 - -2.4
30,432 - +0.3
30,432 - -0.9
30,432 - +0.1
30,432 - -0.4
30,464 + -1.4
30,465 - -1.6
30,585 + GFF3210 0.14 -0.3
30,586 - GFF3210 0.14 -2.0
30,586 - GFF3210 0.14 +0.6
30,586 - GFF3210 0.14 -1.5
30,791 + GFF3210 0.32 -0.9
30,791 + GFF3210 0.32 -0.9
30,904 + GFF3210 0.42 -0.6
30,904 + GFF3210 0.42 +1.5
30,904 + GFF3210 0.42 -0.4
30,904 + GFF3210 0.42 -0.0
30,905 - GFF3210 0.42 -0.6
30,905 - GFF3210 0.42 -0.6
30,905 - GFF3210 0.42 -0.4
30,905 - GFF3210 0.42 +0.0
30,905 - GFF3210 0.42 -0.4
30,905 - GFF3210 0.42 -0.3
30,908 + GFF3210 0.42 +0.3
30,908 + GFF3210 0.42 -0.5
30,908 + GFF3210 0.42 -0.7
30,908 + GFF3210 0.42 +0.3
30,909 - GFF3210 0.42 +0.4
30,909 - GFF3210 0.42 +2.0
30,909 - GFF3210 0.42 +0.3
30,909 - GFF3210 0.42 -0.9
30,909 - GFF3210 0.42 -1.2
30,970 + GFF3210 0.48 -0.0
30,970 + GFF3210 0.48 -1.4
30,970 + GFF3210 0.48 -0.3
30,970 + GFF3210 0.48 -0.4
30,970 + GFF3210 0.48 -0.2
30,971 - GFF3210 0.48 -0.9
30,971 - GFF3210 0.48 -0.3
30,971 - GFF3210 0.48 +0.0
31,094 + GFF3210 0.58 -0.9
31,260 - GFF3210 0.73 -0.1
31,260 - GFF3210 0.73 -0.8
31,283 + GFF3210 0.75 -0.9
31,283 + GFF3210 0.75 -0.3
31,283 + GFF3210 0.75 +0.5
31,283 + GFF3210 0.75 -0.7
31,284 - GFF3210 0.75 -0.6
31,284 - GFF3210 0.75 -3.0
31,284 - GFF3210 0.75 -0.4
31,284 - GFF3210 0.75 +1.0
31,286 + GFF3210 0.75 -0.4
31,286 + GFF3210 0.75 +0.1
31,286 + GFF3210 0.75 -0.5
31,286 + GFF3210 0.75 -0.3
31,286 + GFF3210 0.75 -0.0
31,286 + GFF3210 0.75 -1.3
31,286 + GFF3210 0.75 -0.2
31,286 + GFF3210 0.75 -1.5
31,286 + GFF3210 0.75 +0.8
31,286 + GFF3210 0.75 -0.7
31,286 + GFF3210 0.75 -0.3
31,286 + GFF3210 0.75 -0.3
31,287 - GFF3210 0.75 -0.2
31,287 - GFF3210 0.75 -1.0
31,287 - GFF3210 0.75 -0.4
31,287 - GFF3210 0.75 -0.3
31,307 - GFF3210 0.77 +0.3

Or see this region's nucleotide sequence