Strain Fitness in Variovorax sp. SCN45 around GFF3205

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
22,635	-		GFF3203	0.24	+0.6
22,705	+		GFF3203	0.35	-0.4
22,759	+		GFF3203	0.43	+0.2
22,760	-		GFF3203	0.43	+0.5
22,760	-		GFF3203	0.43	-1.2
22,820	+		GFF3203	0.52	-0.2
23,015	+		GFF3203	0.83	+0.5
23,081	-				-0.3
23,110	+				-0.1
23,111	-				-0.7
23,126	-				-1.1
23,126	-				+1.4
23,126	-				-0.4
23,182	+				+0.3
23,183	-				-0.5
23,255	+		GFF3204	0.20	-0.0
23,255	+		GFF3204	0.20	+1.7
23,350	+		GFF3204	0.54	-0.3
23,350	+		GFF3204	0.54	+0.1
23,351	-		GFF3204	0.54	-0.1
23,351	-		GFF3204	0.54	+0.1
23,640	+		GFF3205	0.12	-1.2
23,641	-		GFF3205	0.13	-0.3
23,641	-		GFF3205	0.13	-1.0
23,719	-		GFF3205	0.48	+0.5
23,781	-		GFF3205	0.77	-0.3
23,787	+		GFF3205	0.79	-0.9
23,883	+				-0.3
23,883	+				-0.2
23,884	-				+0.8
23,884	-				-1.6
23,888	-				+0.5
23,888	-				+0.4
24,119	+		GFF3206	0.59	-0.6
24,119	+		GFF3206	0.59	+0.4
24,549	+				-1.6
24,567	-				-0.3
24,567	-				-1.2
24,601	-				-0.4
24,632	-				-0.3
24,755	+				-0.8
24,756	-				+0.1
24,756	-				-2.2
24,756	-				-0.2