Strain Fitness in Variovorax sp. SCN45 around GFF3040

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
471,465	+				+2.5
471,466	-				-0.7
471,466	-				+0.1
471,466	-				+0.1
471,741	+		GFF3039	0.41	-1.1
471,876	+		GFF3039	0.58	-0.2
471,876	+		GFF3039	0.58	-0.6
471,877	-		GFF3039	0.58	+0.1
471,877	-		GFF3039	0.58	+2.2
472,032	+		GFF3039	0.78	-0.5
472,204	+				-0.1
472,204	+				+0.1
472,205	-				-0.1
472,258	-				+1.0
473,135	+		GFF3040	0.33	+1.0
473,135	+		GFF3040	0.33	-1.8
473,135	+		GFF3040	0.33	+0.2
473,381	-		GFF3040	0.44	+0.4
473,384	+		GFF3040	0.44	-0.3
473,384	+		GFF3040	0.44	+1.6
473,385	-		GFF3040	0.44	+0.0
473,385	-		GFF3040	0.44	-0.2
473,703	+		GFF3040	0.58	+0.4
474,459	+				+0.6
474,460	-				-1.0
474,664	-				-0.5
474,910	+		GFF3041	0.16	-0.7
475,406	-		GFF3041	0.59	-1.2
475,406	-		GFF3041	0.59	-0.2
475,406	-		GFF3041	0.59	+0.1