Strain Fitness in Variovorax sp. SCN45 around GFF3030

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3029 and GFF3030 overlap by 1 nucleotidesGFF3030 and GFF3031 are separated by 74 nucleotides GFF3029 - T6SS component TssM (IcmF/VasK), at 457,341 to 461,426 GFF3029 GFF3030 - Uncharacterized protein ImpA, at 461,426 to 462,625 GFF3030 GFF3031 - hypothetical protein, at 462,700 to 464,118 GFF3031 Position (kb) 461 462 463Strain fitness (log2 ratio) -2 -1 0 1at 460.578 kb on + strand, within GFF3029at 460.578 kb on + strand, within GFF3029at 460.579 kb on - strand, within GFF3029at 460.579 kb on - strand, within GFF3029at 460.602 kb on + strand, within GFF3029at 460.603 kb on - strand, within GFF3029at 460.603 kb on - strand, within GFF3029at 460.603 kb on - strand, within GFF3029at 460.615 kb on - strand, within GFF3029at 461.053 kb on - strandat 461.564 kb on + strand, within GFF3030at 462.314 kb on + strand, within GFF3030at 462.315 kb on - strand, within GFF3030at 462.315 kb on - strand, within GFF3030at 462.315 kb on - strand, within GFF3030at 462.315 kb on - strand, within GFF3030at 462.318 kb on + strand, within GFF3030at 462.318 kb on + strand, within GFF3030at 462.319 kb on - strand, within GFF3030at 462.319 kb on - strand, within GFF3030at 462.437 kb on + strand, within GFF3030at 462.438 kb on - strand, within GFF3030at 462.438 kb on - strand, within GFF3030at 462.438 kb on - strand, within GFF3030at 462.438 kb on - strand, within GFF3030at 462.464 kb on + strand, within GFF3030at 462.501 kb on - strand, within GFF3030at 462.694 kb on + strandat 462.694 kb on + strandat 462.699 kb on + strandat 462.699 kb on + strandat 462.699 kb on + strandat 462.699 kb on + strandat 462.716 kb on + strandat 462.716 kb on + strandat 462.716 kb on + strandat 462.716 kb on + strandat 462.716 kb on + strandat 462.717 kb on - strandat 462.717 kb on - strandat 462.717 kb on - strandat 462.717 kb on - strandat 462.717 kb on - strandat 462.717 kb on - strandat 462.731 kb on + strandat 462.732 kb on - strandat 462.732 kb on - strandat 462.732 kb on - strandat 462.732 kb on - strandat 462.748 kb on + strandat 462.748 kb on + strandat 462.748 kb on + strandat 462.748 kb on + strandat 462.748 kb on + strandat 462.749 kb on - strandat 462.749 kb on - strandat 462.749 kb on - strandat 462.749 kb on - strandat 462.820 kb on + strandat 462.821 kb on - strandat 462.821 kb on - strandat 462.821 kb on - strandat 462.821 kb on - strandat 462.822 kb on - strandat 462.838 kb on - strandat 462.865 kb on + strand, within GFF3031at 462.997 kb on - strand, within GFF3031at 463.040 kb on + strand, within GFF3031at 463.040 kb on + strand, within GFF3031at 463.041 kb on - strand, within GFF3031at 463.041 kb on - strand, within GFF3031at 463.231 kb on + strand, within GFF3031at 463.232 kb on - strand, within GFF3031at 463.385 kb on + strand, within GFF3031at 463.385 kb on + strand, within GFF3031at 463.385 kb on + strand, within GFF3031at 463.385 kb on + strand, within GFF3031at 463.386 kb on - strand, within GFF3031at 463.386 kb on - strand, within GFF3031at 463.386 kb on - strand, within GFF3031at 463.386 kb on - strand, within GFF3031at 463.386 kb on - strand, within GFF3031at 463.389 kb on + strand, within GFF3031at 463.389 kb on + strand, within GFF3031at 463.389 kb on + strand, within GFF3031at 463.390 kb on - strand, within GFF3031at 463.498 kb on + strand, within GFF3031at 463.499 kb on - strand, within GFF3031at 463.499 kb on - strand, within GFF3031at 463.499 kb on - strand, within GFF3031at 463.509 kb on - strand, within GFF3031at 463.572 kb on - strand, within GFF3031at 463.572 kb on - strand, within GFF3031at 463.572 kb on - strand, within GFF3031at 463.573 kb on + strand, within GFF3031at 463.574 kb on - strand, within GFF3031at 463.574 kb on - strand, within GFF3031

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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460,578 + GFF3029 0.79 +0.7
460,578 + GFF3029 0.79 -0.7
460,579 - GFF3029 0.79 -0.8
460,579 - GFF3029 0.79 -0.5
460,602 + GFF3029 0.80 +0.7
460,603 - GFF3029 0.80 +0.5
460,603 - GFF3029 0.80 +0.1
460,603 - GFF3029 0.80 +1.5
460,615 - GFF3029 0.80 +0.2
461,053 - -0.5
461,564 + GFF3030 0.12 -0.1
462,314 + GFF3030 0.74 -1.0
462,315 - GFF3030 0.74 -0.4
462,315 - GFF3030 0.74 -0.8
462,315 - GFF3030 0.74 -0.9
462,315 - GFF3030 0.74 -1.1
462,318 + GFF3030 0.74 -0.6
462,318 + GFF3030 0.74 -0.9
462,319 - GFF3030 0.74 +0.6
462,319 - GFF3030 0.74 +0.2
462,437 + GFF3030 0.84 -0.4
462,438 - GFF3030 0.84 -0.4
462,438 - GFF3030 0.84 -0.5
462,438 - GFF3030 0.84 +0.1
462,438 - GFF3030 0.84 +0.2
462,464 + GFF3030 0.86 -1.2
462,501 - GFF3030 0.90 -0.7
462,694 + -0.1
462,694 + +0.3
462,699 + +1.1
462,699 + -0.4
462,699 + -0.7
462,699 + -0.8
462,716 + -0.1
462,716 + -0.0
462,716 + -0.2
462,716 + +0.1
462,716 + -0.4
462,717 - -1.0
462,717 - -1.0
462,717 - +0.2
462,717 - +0.0
462,717 - -1.1
462,717 - -0.5
462,731 + -0.9
462,732 - +0.3
462,732 - +1.6
462,732 - +1.6
462,732 - -0.3
462,748 + -1.1
462,748 + -0.6
462,748 + +0.1
462,748 + -0.9
462,748 + -0.2
462,749 - +0.1
462,749 - -0.4
462,749 - +0.3
462,749 - -0.4
462,820 + +0.1
462,821 - +1.1
462,821 - +0.7
462,821 - +1.1
462,821 - -0.5
462,822 - -1.1
462,838 - -0.6
462,865 + GFF3031 0.12 -0.1
462,997 - GFF3031 0.21 -0.1
463,040 + GFF3031 0.24 +0.2
463,040 + GFF3031 0.24 -0.4
463,041 - GFF3031 0.24 -0.9
463,041 - GFF3031 0.24 -1.1
463,231 + GFF3031 0.37 +0.3
463,232 - GFF3031 0.37 +0.6
463,385 + GFF3031 0.48 +0.1
463,385 + GFF3031 0.48 -2.7
463,385 + GFF3031 0.48 -1.1
463,385 + GFF3031 0.48 -0.4
463,386 - GFF3031 0.48 +0.2
463,386 - GFF3031 0.48 +0.2
463,386 - GFF3031 0.48 -0.5
463,386 - GFF3031 0.48 -1.8
463,386 - GFF3031 0.48 -0.7
463,389 + GFF3031 0.49 -0.8
463,389 + GFF3031 0.49 +0.0
463,389 + GFF3031 0.49 -0.9
463,390 - GFF3031 0.49 +1.6
463,498 + GFF3031 0.56 +0.6
463,499 - GFF3031 0.56 -1.3
463,499 - GFF3031 0.56 +0.1
463,499 - GFF3031 0.56 -0.2
463,509 - GFF3031 0.57 -0.4
463,572 - GFF3031 0.61 -0.1
463,572 - GFF3031 0.61 -1.5
463,572 - GFF3031 0.61 +0.9
463,573 + GFF3031 0.62 -0.4
463,574 - GFF3031 0.62 -1.7
463,574 - GFF3031 0.62 -1.5

Or see this region's nucleotide sequence