Strain Fitness in Variovorax sp. SCN45 around GFF2864

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF2862 and GFF2863 are separated by 6 nucleotidesGFF2863 and GFF2864 are separated by 8 nucleotidesGFF2864 and GFF2865 are separated by 14 nucleotides GFF2862 - FIG01199081: hypothetical protein, at 285,893 to 286,756 GFF2862 GFF2863 - no description, at 286,763 to 287,440 GFF2863 GFF2864 - no description, at 287,449 to 287,967 GFF2864 GFF2865 - Uncharacterized MFS-type transporter, at 287,982 to 289,511 GFF2865 Position (kb) 287 288Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 286.466 kb on + strand, within GFF2862at 286.466 kb on + strand, within GFF2862at 286.466 kb on + strand, within GFF2862at 286.466 kb on + strand, within GFF2862at 286.467 kb on - strand, within GFF2862at 286.467 kb on - strand, within GFF2862at 286.467 kb on - strand, within GFF2862at 286.623 kb on - strand, within GFF2862at 286.623 kb on - strand, within GFF2862at 286.623 kb on - strand, within GFF2862at 286.623 kb on - strand, within GFF2862at 286.700 kb on + strandat 286.700 kb on + strandat 286.700 kb on + strandat 286.701 kb on - strandat 286.745 kb on + strandat 286.745 kb on + strandat 286.745 kb on + strandat 286.745 kb on + strandat 286.745 kb on + strandat 286.746 kb on - strandat 286.746 kb on - strandat 287.031 kb on + strand, within GFF2863at 287.031 kb on + strand, within GFF2863at 287.031 kb on + strand, within GFF2863at 287.031 kb on + strand, within GFF2863at 287.073 kb on + strand, within GFF2863at 287.073 kb on + strand, within GFF2863at 287.073 kb on + strand, within GFF2863at 287.073 kb on + strand, within GFF2863at 287.073 kb on + strand, within GFF2863at 287.073 kb on + strand, within GFF2863at 287.073 kb on + strand, within GFF2863at 287.073 kb on + strand, within GFF2863at 287.074 kb on - strand, within GFF2863at 287.074 kb on - strand, within GFF2863at 287.074 kb on - strand, within GFF2863at 287.074 kb on - strand, within GFF2863at 287.074 kb on - strand, within GFF2863at 287.074 kb on - strand, within GFF2863at 287.074 kb on - strand, within GFF2863at 287.074 kb on - strand, within GFF2863at 287.074 kb on - strand, within GFF2863at 287.223 kb on + strand, within GFF2863at 287.223 kb on + strand, within GFF2863at 287.223 kb on + strand, within GFF2863at 287.223 kb on + strand, within GFF2863at 287.223 kb on + strand, within GFF2863at 287.223 kb on + strand, within GFF2863at 287.224 kb on - strand, within GFF2863at 287.224 kb on - strand, within GFF2863at 287.224 kb on - strand, within GFF2863at 287.229 kb on + strand, within GFF2863at 287.229 kb on + strand, within GFF2863at 287.229 kb on + strand, within GFF2863at 287.229 kb on + strand, within GFF2863at 287.229 kb on + strand, within GFF2863at 287.229 kb on + strand, within GFF2863at 287.229 kb on + strand, within GFF2863at 287.229 kb on + strand, within GFF2863at 287.229 kb on + strand, within GFF2863at 287.229 kb on + strand, within GFF2863at 287.229 kb on + strand, within GFF2863at 287.229 kb on + strand, within GFF2863at 287.229 kb on + strand, within GFF2863at 287.229 kb on + strand, within GFF2863at 287.229 kb on + strand, within GFF2863at 287.229 kb on + strand, within GFF2863at 287.229 kb on + strand, within GFF2863at 287.230 kb on - strand, within GFF2863at 287.230 kb on - strand, within GFF2863at 287.230 kb on - strand, within GFF2863at 287.230 kb on - strand, within GFF2863at 287.230 kb on - strand, within GFF2863at 287.230 kb on - strand, within GFF2863at 287.230 kb on - strand, within GFF2863at 287.230 kb on - strand, within GFF2863at 287.230 kb on - strand, within GFF2863at 287.230 kb on - strand, within GFF2863at 287.230 kb on - strand, within GFF2863at 287.230 kb on - strand, within GFF2863at 287.230 kb on - strand, within GFF2863at 287.230 kb on - strand, within GFF2863at 287.230 kb on - strand, within GFF2863at 287.230 kb on - strand, within GFF2863at 287.230 kb on - strand, within GFF2863at 287.230 kb on - strand, within GFF2863at 287.230 kb on - strand, within GFF2863at 287.230 kb on - strand, within GFF2863at 287.230 kb on - strand, within GFF2863at 287.230 kb on - strand, within GFF2863at 287.230 kb on - strand, within GFF2863at 287.603 kb on - strand, within GFF2864at 287.603 kb on - strand, within GFF2864at 287.603 kb on - strand, within GFF2864at 287.603 kb on - strand, within GFF2864at 287.603 kb on - strand, within GFF2864at 287.664 kb on + strand, within GFF2864at 287.664 kb on + strand, within GFF2864at 287.664 kb on + strand, within GFF2864at 287.664 kb on + strand, within GFF2864at 287.664 kb on + strand, within GFF2864at 287.664 kb on + strand, within GFF2864at 287.664 kb on + strand, within GFF2864at 287.664 kb on + strand, within GFF2864at 287.664 kb on + strand, within GFF2864at 287.664 kb on + strand, within GFF2864at 287.664 kb on + strand, within GFF2864at 287.664 kb on + strand, within GFF2864at 287.665 kb on - strand, within GFF2864at 287.665 kb on - strand, within GFF2864at 287.665 kb on - strand, within GFF2864at 287.665 kb on - strand, within GFF2864at 287.954 kb on + strandat 287.954 kb on + strandat 287.954 kb on + strandat 287.954 kb on + strandat 287.954 kb on + strandat 287.954 kb on + strandat 287.954 kb on + strandat 287.954 kb on + strandat 287.955 kb on - strandat 287.955 kb on - strandat 287.955 kb on - strandat 287.955 kb on - strandat 287.955 kb on - strandat 287.955 kb on - strandat 287.955 kb on - strandat 287.955 kb on - strandat 287.955 kb on - strandat 287.955 kb on - strandat 287.955 kb on - strandat 287.955 kb on - strandat 288.430 kb on + strand, within GFF2865at 288.430 kb on + strand, within GFF2865at 288.430 kb on + strand, within GFF2865at 288.431 kb on - strand, within GFF2865at 288.485 kb on + strand, within GFF2865at 288.485 kb on + strand, within GFF2865at 288.485 kb on + strand, within GFF2865at 288.485 kb on + strand, within GFF2865at 288.485 kb on + strand, within GFF2865at 288.485 kb on + strand, within GFF2865at 288.485 kb on + strand, within GFF2865at 288.486 kb on - strand, within GFF2865at 288.486 kb on - strand, within GFF2865at 288.486 kb on - strand, within GFF2865at 288.486 kb on - strand, within GFF2865at 288.486 kb on - strand, within GFF2865at 288.486 kb on - strand, within GFF2865at 288.486 kb on - strand, within GFF2865at 288.486 kb on - strand, within GFF2865at 288.486 kb on - strand, within GFF2865at 288.486 kb on - strand, within GFF2865at 288.486 kb on - strand, within GFF2865at 288.486 kb on - strand, within GFF2865at 288.487 kb on + strand, within GFF2865at 288.487 kb on + strand, within GFF2865at 288.655 kb on + strand, within GFF2865at 288.655 kb on + strand, within GFF2865at 288.853 kb on + strand, within GFF2865at 288.853 kb on + strand, within GFF2865at 288.853 kb on + strand, within GFF2865at 288.853 kb on + strand, within GFF2865at 288.853 kb on + strand, within GFF2865at 288.853 kb on + strand, within GFF2865at 288.853 kb on + strand, within GFF2865at 288.853 kb on + strand, within GFF2865at 288.854 kb on - strand, within GFF2865at 288.854 kb on - strand, within GFF2865at 288.854 kb on - strand, within GFF2865at 288.854 kb on - strand, within GFF2865at 288.881 kb on + strand, within GFF2865at 288.881 kb on + strand, within GFF2865at 288.881 kb on + strand, within GFF2865at 288.882 kb on - strand, within GFF2865at 288.882 kb on - strand, within GFF2865at 288.882 kb on - strand, within GFF2865

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
remove
286,466 + GFF2862 0.66 +0.2
286,466 + GFF2862 0.66 -1.0
286,466 + GFF2862 0.66 -0.4
286,466 + GFF2862 0.66 -0.2
286,467 - GFF2862 0.66 +0.0
286,467 - GFF2862 0.66 -0.2
286,467 - GFF2862 0.66 -1.7
286,623 - GFF2862 0.84 -0.4
286,623 - GFF2862 0.84 -1.1
286,623 - GFF2862 0.84 +1.6
286,623 - GFF2862 0.84 +0.3
286,700 + -1.0
286,700 + +0.8
286,700 + -0.7
286,701 - -0.5
286,745 + -1.1
286,745 + -1.8
286,745 + -0.7
286,745 + +0.1
286,745 + +0.4
286,746 - -0.2
286,746 - -0.4
287,031 + GFF2863 0.40 +1.0
287,031 + GFF2863 0.40 -1.4
287,031 + GFF2863 0.40 -0.7
287,031 + GFF2863 0.40 -0.5
287,073 + GFF2863 0.46 +1.0
287,073 + GFF2863 0.46 -0.7
287,073 + GFF2863 0.46 +0.6
287,073 + GFF2863 0.46 -0.7
287,073 + GFF2863 0.46 -0.3
287,073 + GFF2863 0.46 +1.6
287,073 + GFF2863 0.46 +0.6
287,073 + GFF2863 0.46 -1.0
287,074 - GFF2863 0.46 -0.5
287,074 - GFF2863 0.46 +0.0
287,074 - GFF2863 0.46 -0.4
287,074 - GFF2863 0.46 +0.7
287,074 - GFF2863 0.46 +0.4
287,074 - GFF2863 0.46 -0.1
287,074 - GFF2863 0.46 -0.7
287,074 - GFF2863 0.46 +0.0
287,074 - GFF2863 0.46 +0.2
287,223 + GFF2863 0.68 -1.4
287,223 + GFF2863 0.68 -0.1
287,223 + GFF2863 0.68 +1.6
287,223 + GFF2863 0.68 -0.5
287,223 + GFF2863 0.68 -0.6
287,223 + GFF2863 0.68 -0.3
287,224 - GFF2863 0.68 -1.0
287,224 - GFF2863 0.68 -0.5
287,224 - GFF2863 0.68 +0.3
287,229 + GFF2863 0.69 +0.4
287,229 + GFF2863 0.69 +0.2
287,229 + GFF2863 0.69 +0.4
287,229 + GFF2863 0.69 +0.5
287,229 + GFF2863 0.69 -0.1
287,229 + GFF2863 0.69 -0.2
287,229 + GFF2863 0.69 +0.4
287,229 + GFF2863 0.69 -0.6
287,229 + GFF2863 0.69 -1.0
287,229 + GFF2863 0.69 -0.2
287,229 + GFF2863 0.69 -0.0
287,229 + GFF2863 0.69 +0.8
287,229 + GFF2863 0.69 -1.2
287,229 + GFF2863 0.69 +0.8
287,229 + GFF2863 0.69 -1.2
287,229 + GFF2863 0.69 -0.6
287,229 + GFF2863 0.69 +0.9
287,230 - GFF2863 0.69 +0.6
287,230 - GFF2863 0.69 -2.4
287,230 - GFF2863 0.69 -0.2
287,230 - GFF2863 0.69 -0.4
287,230 - GFF2863 0.69 +0.3
287,230 - GFF2863 0.69 -0.1
287,230 - GFF2863 0.69 -0.7
287,230 - GFF2863 0.69 +1.8
287,230 - GFF2863 0.69 -0.3
287,230 - GFF2863 0.69 -0.3
287,230 - GFF2863 0.69 -0.3
287,230 - GFF2863 0.69 +0.9
287,230 - GFF2863 0.69 +0.0
287,230 - GFF2863 0.69 -0.0
287,230 - GFF2863 0.69 +0.2
287,230 - GFF2863 0.69 +1.9
287,230 - GFF2863 0.69 -1.4
287,230 - GFF2863 0.69 -2.8
287,230 - GFF2863 0.69 +0.2
287,230 - GFF2863 0.69 +0.8
287,230 - GFF2863 0.69 -0.6
287,230 - GFF2863 0.69 -0.8
287,230 - GFF2863 0.69 +0.6
287,603 - GFF2864 0.30 +1.0
287,603 - GFF2864 0.30 +0.6
287,603 - GFF2864 0.30 +0.6
287,603 - GFF2864 0.30 -0.5
287,603 - GFF2864 0.30 +1.0
287,664 + GFF2864 0.41 +0.6
287,664 + GFF2864 0.41 -0.6
287,664 + GFF2864 0.41 +1.0
287,664 + GFF2864 0.41 -1.8
287,664 + GFF2864 0.41 +0.3
287,664 + GFF2864 0.41 +0.3
287,664 + GFF2864 0.41 -0.1
287,664 + GFF2864 0.41 -0.1
287,664 + GFF2864 0.41 -1.7
287,664 + GFF2864 0.41 -1.5
287,664 + GFF2864 0.41 -0.7
287,664 + GFF2864 0.41 -1.1
287,665 - GFF2864 0.42 +1.6
287,665 - GFF2864 0.42 -0.6
287,665 - GFF2864 0.42 +0.8
287,665 - GFF2864 0.42 +2.0
287,954 + -0.9
287,954 + -0.3
287,954 + -1.4
287,954 + +0.3
287,954 + +0.4
287,954 + -0.6
287,954 + -0.5
287,954 + -0.4
287,955 - +0.3
287,955 - +0.5
287,955 - -1.7
287,955 - +0.2
287,955 - +0.3
287,955 - +0.0
287,955 - -0.8
287,955 - +0.0
287,955 - +0.6
287,955 - -1.7
287,955 - +0.6
287,955 - -0.4
288,430 + GFF2865 0.29 -0.5
288,430 + GFF2865 0.29 -1.4
288,430 + GFF2865 0.29 +0.6
288,431 - GFF2865 0.29 -0.1
288,485 + GFF2865 0.33 -0.8
288,485 + GFF2865 0.33 +0.2
288,485 + GFF2865 0.33 -0.4
288,485 + GFF2865 0.33 -2.3
288,485 + GFF2865 0.33 +0.3
288,485 + GFF2865 0.33 -1.8
288,485 + GFF2865 0.33 -0.4
288,486 - GFF2865 0.33 +1.0
288,486 - GFF2865 0.33 -0.7
288,486 - GFF2865 0.33 -0.4
288,486 - GFF2865 0.33 +0.6
288,486 - GFF2865 0.33 -0.2
288,486 - GFF2865 0.33 -0.3
288,486 - GFF2865 0.33 +1.1
288,486 - GFF2865 0.33 -0.1
288,486 - GFF2865 0.33 -2.7
288,486 - GFF2865 0.33 -0.8
288,486 - GFF2865 0.33 -0.3
288,486 - GFF2865 0.33 -1.1
288,487 + GFF2865 0.33 -1.2
288,487 + GFF2865 0.33 -0.4
288,655 + GFF2865 0.44 +1.3
288,655 + GFF2865 0.44 +0.4
288,853 + GFF2865 0.57 -0.2
288,853 + GFF2865 0.57 +0.7
288,853 + GFF2865 0.57 -0.3
288,853 + GFF2865 0.57 -0.7
288,853 + GFF2865 0.57 +0.0
288,853 + GFF2865 0.57 +0.0
288,853 + GFF2865 0.57 -0.9
288,853 + GFF2865 0.57 -0.1
288,854 - GFF2865 0.57 -0.3
288,854 - GFF2865 0.57 -0.1
288,854 - GFF2865 0.57 -1.6
288,854 - GFF2865 0.57 +0.1
288,881 + GFF2865 0.59 +0.2
288,881 + GFF2865 0.59 -0.5
288,881 + GFF2865 0.59 -1.1
288,882 - GFF2865 0.59 -0.1
288,882 - GFF2865 0.59 +0.5
288,882 - GFF2865 0.59 -0.5

Or see this region's nucleotide sequence