Strain Fitness in Variovorax sp. SCN45 around GFF2774

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2773 and GFF2774 are separated by 78 nucleotidesGFF2774 and GFF2775 are separated by 13 nucleotides GFF2773 - BUG/TctC family periplasmic protein, at 202,998 to 203,972 GFF2773 GFF2774 - Auxin efflux carrier family protein, at 204,051 to 204,995 GFF2774 GFF2775 - Lignostilbene-alpha,beta-dioxygenase and related enzymes, at 205,009 to 206,463 GFF2775 Position (kb) 204 205Strain fitness (log2 ratio) -2 -1 0 1 2 3at 203.216 kb on - strand, within GFF2773at 203.218 kb on + strand, within GFF2773at 203.218 kb on + strand, within GFF2773at 203.218 kb on + strand, within GFF2773at 203.218 kb on + strand, within GFF2773at 203.218 kb on + strand, within GFF2773at 203.219 kb on - strand, within GFF2773at 203.219 kb on - strand, within GFF2773at 203.219 kb on - strand, within GFF2773at 203.219 kb on - strand, within GFF2773at 203.458 kb on + strand, within GFF2773at 203.458 kb on + strand, within GFF2773at 203.458 kb on + strand, within GFF2773at 203.458 kb on + strand, within GFF2773at 203.458 kb on + strand, within GFF2773at 203.458 kb on + strand, within GFF2773at 203.458 kb on + strand, within GFF2773at 203.458 kb on + strand, within GFF2773at 203.458 kb on + strand, within GFF2773at 203.458 kb on + strand, within GFF2773at 203.459 kb on - strand, within GFF2773at 203.459 kb on - strand, within GFF2773at 203.459 kb on - strand, within GFF2773at 203.459 kb on - strand, within GFF2773at 203.506 kb on + strand, within GFF2773at 203.507 kb on - strand, within GFF2773at 203.512 kb on + strand, within GFF2773at 203.512 kb on + strand, within GFF2773at 203.512 kb on + strand, within GFF2773at 203.512 kb on + strand, within GFF2773at 203.512 kb on + strand, within GFF2773at 203.512 kb on + strand, within GFF2773at 203.512 kb on + strand, within GFF2773at 203.513 kb on - strand, within GFF2773at 203.513 kb on - strand, within GFF2773at 203.513 kb on - strand, within GFF2773at 203.513 kb on - strand, within GFF2773at 203.513 kb on - strand, within GFF2773at 203.513 kb on - strand, within GFF2773at 203.554 kb on + strand, within GFF2773at 203.554 kb on + strand, within GFF2773at 203.554 kb on + strand, within GFF2773at 203.554 kb on + strand, within GFF2773at 203.555 kb on - strand, within GFF2773at 203.555 kb on - strand, within GFF2773at 203.555 kb on - strand, within GFF2773at 203.555 kb on - strand, within GFF2773at 203.711 kb on - strand, within GFF2773at 203.894 kb on - strandat 203.920 kb on - strandat 204.024 kb on + strandat 204.057 kb on + strandat 204.058 kb on - strandat 204.096 kb on + strandat 204.096 kb on + strandat 204.096 kb on + strandat 204.097 kb on - strandat 204.097 kb on - strandat 204.097 kb on - strandat 204.097 kb on - strandat 204.097 kb on - strandat 204.097 kb on - strandat 204.204 kb on + strand, within GFF2774at 204.204 kb on + strand, within GFF2774at 204.204 kb on + strand, within GFF2774at 204.207 kb on + strand, within GFF2774at 204.207 kb on + strand, within GFF2774at 204.208 kb on - strand, within GFF2774at 204.327 kb on + strand, within GFF2774at 204.328 kb on - strand, within GFF2774at 204.328 kb on - strand, within GFF2774at 204.882 kb on + strand, within GFF2774at 204.882 kb on + strand, within GFF2774at 204.882 kb on + strand, within GFF2774at 204.882 kb on + strand, within GFF2774at 204.882 kb on + strand, within GFF2774at 204.883 kb on - strand, within GFF2774at 204.883 kb on - strand, within GFF2774at 204.883 kb on - strand, within GFF2774at 204.883 kb on - strand, within GFF2774at 204.883 kb on - strand, within GFF2774at 204.906 kb on + strandat 204.906 kb on + strandat 204.907 kb on - strandat 204.907 kb on - strandat 204.907 kb on - strandat 204.907 kb on - strandat 204.907 kb on - strandat 204.907 kb on - strandat 204.907 kb on - strandat 204.907 kb on - strandat 204.918 kb on + strandat 204.918 kb on + strandat 204.918 kb on + strandat 204.918 kb on + strandat 204.918 kb on + strandat 204.918 kb on + strandat 204.918 kb on + strandat 204.918 kb on + strandat 204.918 kb on + strandat 204.918 kb on + strandat 204.918 kb on + strandat 204.918 kb on + strandat 204.918 kb on + strandat 204.918 kb on + strandat 204.918 kb on + strandat 204.918 kb on + strandat 204.918 kb on + strandat 204.918 kb on + strandat 204.919 kb on - strandat 204.919 kb on - strandat 204.919 kb on - strandat 204.919 kb on - strandat 204.919 kb on - strandat 204.919 kb on - strandat 204.919 kb on - strandat 204.919 kb on - strandat 204.919 kb on - strandat 204.919 kb on - strandat 204.919 kb on - strandat 204.919 kb on - strandat 204.919 kb on - strandat 204.919 kb on - strandat 204.919 kb on - strandat 204.919 kb on - strandat 204.919 kb on - strandat 204.994 kb on - strandat 205.337 kb on + strand, within GFF2775at 205.337 kb on + strand, within GFF2775at 205.337 kb on + strand, within GFF2775at 205.337 kb on + strand, within GFF2775at 205.337 kb on + strand, within GFF2775at 205.337 kb on + strand, within GFF2775at 205.338 kb on - strand, within GFF2775at 205.338 kb on - strand, within GFF2775at 205.338 kb on - strand, within GFF2775at 205.338 kb on - strand, within GFF2775at 205.338 kb on - strand, within GFF2775at 205.338 kb on - strand, within GFF2775at 205.338 kb on - strand, within GFF2775at 205.338 kb on - strand, within GFF2775at 205.338 kb on - strand, within GFF2775at 205.346 kb on + strand, within GFF2775at 205.346 kb on + strand, within GFF2775at 205.346 kb on + strand, within GFF2775at 205.346 kb on + strand, within GFF2775at 205.346 kb on + strand, within GFF2775at 205.347 kb on - strand, within GFF2775at 205.347 kb on - strand, within GFF2775at 205.347 kb on - strand, within GFF2775at 205.347 kb on - strand, within GFF2775at 205.347 kb on - strand, within GFF2775at 205.347 kb on - strand, within GFF2775at 205.347 kb on - strand, within GFF2775at 205.412 kb on + strand, within GFF2775at 205.412 kb on + strand, within GFF2775at 205.413 kb on - strand, within GFF2775at 205.413 kb on - strand, within GFF2775at 205.796 kb on + strand, within GFF2775at 205.796 kb on + strand, within GFF2775at 205.796 kb on + strand, within GFF2775at 205.797 kb on - strand, within GFF2775at 205.797 kb on - strand, within GFF2775at 205.853 kb on + strand, within GFF2775at 205.853 kb on + strand, within GFF2775at 205.854 kb on - strand, within GFF2775at 205.854 kb on - strand, within GFF2775at 205.889 kb on + strand, within GFF2775

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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203,216 - GFF2773 0.22 +1.3
203,218 + GFF2773 0.23 +0.5
203,218 + GFF2773 0.23 -0.6
203,218 + GFF2773 0.23 -1.0
203,218 + GFF2773 0.23 -0.4
203,218 + GFF2773 0.23 -0.7
203,219 - GFF2773 0.23 -0.1
203,219 - GFF2773 0.23 -0.6
203,219 - GFF2773 0.23 -0.3
203,219 - GFF2773 0.23 -0.7
203,458 + GFF2773 0.47 +0.4
203,458 + GFF2773 0.47 -0.6
203,458 + GFF2773 0.47 +0.5
203,458 + GFF2773 0.47 +2.2
203,458 + GFF2773 0.47 -0.4
203,458 + GFF2773 0.47 -0.3
203,458 + GFF2773 0.47 +0.8
203,458 + GFF2773 0.47 -0.3
203,458 + GFF2773 0.47 -0.1
203,458 + GFF2773 0.47 -0.0
203,459 - GFF2773 0.47 -2.2
203,459 - GFF2773 0.47 -1.7
203,459 - GFF2773 0.47 +0.4
203,459 - GFF2773 0.47 +0.0
203,506 + GFF2773 0.52 -0.5
203,507 - GFF2773 0.52 -1.6
203,512 + GFF2773 0.53 -0.2
203,512 + GFF2773 0.53 +1.8
203,512 + GFF2773 0.53 +0.2
203,512 + GFF2773 0.53 -1.0
203,512 + GFF2773 0.53 +0.5
203,512 + GFF2773 0.53 -0.2
203,512 + GFF2773 0.53 -1.3
203,513 - GFF2773 0.53 -1.6
203,513 - GFF2773 0.53 +0.8
203,513 - GFF2773 0.53 +0.9
203,513 - GFF2773 0.53 +0.4
203,513 - GFF2773 0.53 -0.9
203,513 - GFF2773 0.53 -0.3
203,554 + GFF2773 0.57 +1.2
203,554 + GFF2773 0.57 -0.5
203,554 + GFF2773 0.57 +0.0
203,554 + GFF2773 0.57 -0.7
203,555 - GFF2773 0.57 +0.1
203,555 - GFF2773 0.57 -1.3
203,555 - GFF2773 0.57 -1.1
203,555 - GFF2773 0.57 -0.3
203,711 - GFF2773 0.73 +0.3
203,894 - -0.0
203,920 - -1.0
204,024 + -0.2
204,057 + +0.1
204,058 - -1.9
204,096 + +0.4
204,096 + -0.6
204,096 + +0.2
204,097 - +0.1
204,097 - -1.0
204,097 - -1.4
204,097 - -2.0
204,097 - -0.4
204,097 - +0.4
204,204 + GFF2774 0.16 -0.0
204,204 + GFF2774 0.16 -1.0
204,204 + GFF2774 0.16 -0.4
204,207 + GFF2774 0.17 -0.2
204,207 + GFF2774 0.17 -1.1
204,208 - GFF2774 0.17 +1.1
204,327 + GFF2774 0.29 +0.1
204,328 - GFF2774 0.29 +0.6
204,328 - GFF2774 0.29 -0.3
204,882 + GFF2774 0.88 -1.9
204,882 + GFF2774 0.88 +0.3
204,882 + GFF2774 0.88 +0.8
204,882 + GFF2774 0.88 +1.2
204,882 + GFF2774 0.88 -0.8
204,883 - GFF2774 0.88 +0.3
204,883 - GFF2774 0.88 +0.6
204,883 - GFF2774 0.88 -2.4
204,883 - GFF2774 0.88 -0.1
204,883 - GFF2774 0.88 -0.6
204,906 + -0.1
204,906 + +0.0
204,907 - -0.5
204,907 - +0.4
204,907 - -0.7
204,907 - -1.0
204,907 - -1.2
204,907 - -0.6
204,907 - +1.6
204,907 - -0.4
204,918 + +0.2
204,918 + +0.2
204,918 + +0.1
204,918 + -0.1
204,918 + -0.1
204,918 + -0.3
204,918 + -0.7
204,918 + +0.3
204,918 + -0.4
204,918 + +0.5
204,918 + +1.0
204,918 + +0.2
204,918 + +1.3
204,918 + +0.5
204,918 + -0.4
204,918 + -1.4
204,918 + +0.0
204,918 + -0.8
204,919 - +0.1
204,919 - -0.4
204,919 - +0.4
204,919 - -0.8
204,919 - -1.1
204,919 - -0.7
204,919 - -0.3
204,919 - +0.6
204,919 - +0.6
204,919 - +0.2
204,919 - +2.9
204,919 - -1.7
204,919 - +0.3
204,919 - +0.0
204,919 - -0.7
204,919 - +0.6
204,919 - -0.1
204,994 - +0.6
205,337 + GFF2775 0.23 +0.2
205,337 + GFF2775 0.23 -0.3
205,337 + GFF2775 0.23 +0.9
205,337 + GFF2775 0.23 +0.2
205,337 + GFF2775 0.23 -0.1
205,337 + GFF2775 0.23 -1.1
205,338 - GFF2775 0.23 +0.2
205,338 - GFF2775 0.23 +0.7
205,338 - GFF2775 0.23 -0.0
205,338 - GFF2775 0.23 -0.8
205,338 - GFF2775 0.23 -0.3
205,338 - GFF2775 0.23 -0.2
205,338 - GFF2775 0.23 +0.7
205,338 - GFF2775 0.23 +0.0
205,338 - GFF2775 0.23 +1.6
205,346 + GFF2775 0.23 -0.6
205,346 + GFF2775 0.23 +0.3
205,346 + GFF2775 0.23 -1.0
205,346 + GFF2775 0.23 -0.7
205,346 + GFF2775 0.23 -0.1
205,347 - GFF2775 0.23 +0.6
205,347 - GFF2775 0.23 +0.1
205,347 - GFF2775 0.23 +0.3
205,347 - GFF2775 0.23 +1.2
205,347 - GFF2775 0.23 -0.2
205,347 - GFF2775 0.23 +0.0
205,347 - GFF2775 0.23 +0.3
205,412 + GFF2775 0.28 -1.2
205,412 + GFF2775 0.28 +0.6
205,413 - GFF2775 0.28 -0.2
205,413 - GFF2775 0.28 -1.2
205,796 + GFF2775 0.54 +1.1
205,796 + GFF2775 0.54 -0.4
205,796 + GFF2775 0.54 -0.6
205,797 - GFF2775 0.54 +0.1
205,797 - GFF2775 0.54 -1.3
205,853 + GFF2775 0.58 +1.6
205,853 + GFF2775 0.58 -0.9
205,854 - GFF2775 0.58 +0.1
205,854 - GFF2775 0.58 -0.9
205,889 + GFF2775 0.60 -0.8

Or see this region's nucleotide sequence