Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2488 and GFF2489 are separated by 127 nucleotides GFF2489 and GFF2490 are separated by 7 nucleotides GFF2490 and GFF2491 are separated by 177 nucleotides
GFF2488 - Two-component transcriptional response regulator, LuxR family, at 547,053 to 548,093
GFF2488
GFF2489 - hypothetical protein, at 548,221 to 548,880
GFF2489
GFF2490 - Transcriptional regulator, LysR family, at 548,888 to 549,808
GFF2490
GFF2491 - Threonine-synthase-like protein 3, at 549,986 to 551,134
GFF2491
Position (kb) 548
549
550 Strain fitness (log2 ratio) -2
-1
0
1
2 at 547.914 kb on + strand, within GFF2488 at 547.914 kb on + strand, within GFF2488 at 547.915 kb on - strand, within GFF2488 at 548.004 kb on + strand at 548.004 kb on + strand at 548.004 kb on + strand at 548.004 kb on + strand at 548.004 kb on + strand at 548.146 kb on + strand at 548.146 kb on + strand at 548.146 kb on + strand at 548.146 kb on + strand at 548.146 kb on + strand at 548.147 kb on - strand at 548.147 kb on - strand at 548.147 kb on - strand at 548.147 kb on - strand at 548.147 kb on - strand at 548.147 kb on - strand at 548.323 kb on + strand, within GFF2489 at 548.323 kb on + strand, within GFF2489 at 548.323 kb on + strand, within GFF2489 at 548.323 kb on + strand, within GFF2489 at 548.323 kb on + strand, within GFF2489 at 548.324 kb on - strand, within GFF2489 at 548.324 kb on - strand, within GFF2489 at 548.899 kb on - strand at 549.012 kb on + strand, within GFF2490 at 549.012 kb on + strand, within GFF2490 at 549.012 kb on + strand, within GFF2490 at 549.012 kb on + strand, within GFF2490 at 549.012 kb on + strand, within GFF2490 at 549.013 kb on - strand, within GFF2490 at 549.013 kb on - strand, within GFF2490 at 549.013 kb on - strand, within GFF2490 at 549.013 kb on - strand, within GFF2490 at 549.057 kb on + strand, within GFF2490 at 549.058 kb on - strand, within GFF2490 at 549.132 kb on + strand, within GFF2490 at 549.133 kb on - strand, within GFF2490 at 549.133 kb on - strand, within GFF2490 at 549.133 kb on - strand, within GFF2490 at 549.133 kb on - strand, within GFF2490 at 549.133 kb on - strand, within GFF2490 at 549.508 kb on - strand, within GFF2490 at 549.508 kb on - strand, within GFF2490 at 549.508 kb on - strand, within GFF2490 at 549.833 kb on + strand at 549.847 kb on + strand at 549.867 kb on + strand at 549.867 kb on + strand at 549.885 kb on + strand at 549.885 kb on + strand at 549.885 kb on + strand at 549.885 kb on + strand at 549.885 kb on + strand at 549.885 kb on + strand at 549.886 kb on - strand at 549.886 kb on - strand at 549.886 kb on - strand at 549.886 kb on - strand at 549.886 kb on - strand at 549.886 kb on - strand at 549.886 kb on - strand at 549.886 kb on - strand at 549.886 kb on - strand at 549.886 kb on - strand at 550.064 kb on + strand at 550.139 kb on + strand, within GFF2491 at 550.139 kb on + strand, within GFF2491 at 550.139 kb on + strand, within GFF2491 at 550.139 kb on + strand, within GFF2491 at 550.140 kb on - strand, within GFF2491 at 550.178 kb on + strand, within GFF2491 at 550.178 kb on + strand, within GFF2491 at 550.178 kb on + strand, within GFF2491 at 550.178 kb on + strand, within GFF2491 at 550.179 kb on - strand, within GFF2491 at 550.406 kb on + strand, within GFF2491 at 550.406 kb on + strand, within GFF2491 at 550.446 kb on - strand, within GFF2491 at 550.466 kb on + strand, within GFF2491 at 550.466 kb on + strand, within GFF2491 at 550.466 kb on + strand, within GFF2491 at 550.466 kb on + strand, within GFF2491 at 550.467 kb on - strand, within GFF2491 at 550.467 kb on - strand, within GFF2491 at 550.467 kb on - strand, within GFF2491 at 550.467 kb on - strand, within GFF2491 at 550.467 kb on - strand, within GFF2491 at 550.467 kb on - strand, within GFF2491 at 550.503 kb on - strand, within GFF2491 at 550.556 kb on + strand, within GFF2491 at 550.583 kb on + strand, within GFF2491 at 550.583 kb on + strand, within GFF2491 at 550.583 kb on + strand, within GFF2491 at 550.584 kb on - strand, within GFF2491 at 550.584 kb on - strand, within GFF2491 at 550.584 kb on - strand, within GFF2491 at 550.620 kb on + strand, within GFF2491 at 550.620 kb on + strand, within GFF2491 at 550.620 kb on + strand, within GFF2491 at 550.620 kb on + strand, within GFF2491 at 550.620 kb on + strand, within GFF2491 at 550.620 kb on + strand, within GFF2491 at 550.621 kb on - strand, within GFF2491 at 550.621 kb on - strand, within GFF2491 at 550.621 kb on - strand, within GFF2491 at 550.621 kb on - strand, within GFF2491 at 550.621 kb on - strand, within GFF2491 at 550.621 kb on - strand, within GFF2491 at 550.628 kb on + strand, within GFF2491 at 550.628 kb on + strand, within GFF2491 at 550.629 kb on - strand, within GFF2491 at 550.629 kb on - strand, within GFF2491 at 550.629 kb on - strand, within GFF2491 at 550.629 kb on - strand, within GFF2491 at 550.629 kb on - strand, within GFF2491 at 550.629 kb on - strand, within GFF2491 at 550.721 kb on + strand, within GFF2491 at 550.722 kb on - strand, within GFF2491 at 550.722 kb on - strand, within GFF2491 at 550.722 kb on - strand, within GFF2491 at 550.722 kb on - strand, within GFF2491 at 550.722 kb on - strand, within GFF2491
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL remove 547,914 + GFF2488 0.83 +0.3 547,914 + GFF2488 0.83 -0.1 547,915 - GFF2488 0.83 -0.8 548,004 + -0.5 548,004 + +0.4 548,004 + -1.8 548,004 + -0.5 548,004 + -2.4 548,146 + +0.0 548,146 + -0.5 548,146 + +0.1 548,146 + -0.8 548,146 + -0.8 548,147 - -1.7 548,147 - -0.2 548,147 - -0.6 548,147 - -0.3 548,147 - -0.5 548,147 - +0.3 548,323 + GFF2489 0.15 -0.6 548,323 + GFF2489 0.15 -0.6 548,323 + GFF2489 0.15 -0.9 548,323 + GFF2489 0.15 +0.7 548,323 + GFF2489 0.15 -0.4 548,324 - GFF2489 0.16 -0.8 548,324 - GFF2489 0.16 -0.3 548,899 - -0.1 549,012 + GFF2490 0.13 +0.5 549,012 + GFF2490 0.13 -0.4 549,012 + GFF2490 0.13 -0.0 549,012 + GFF2490 0.13 -0.0 549,012 + GFF2490 0.13 +0.8 549,013 - GFF2490 0.14 +0.2 549,013 - GFF2490 0.14 +0.7 549,013 - GFF2490 0.14 -0.2 549,013 - GFF2490 0.14 +1.5 549,057 + GFF2490 0.18 +0.9 549,058 - GFF2490 0.18 -1.1 549,132 + GFF2490 0.26 +0.4 549,133 - GFF2490 0.27 -0.7 549,133 - GFF2490 0.27 +0.5 549,133 - GFF2490 0.27 -1.2 549,133 - GFF2490 0.27 -0.2 549,133 - GFF2490 0.27 +1.1 549,508 - GFF2490 0.67 -0.8 549,508 - GFF2490 0.67 +0.4 549,508 - GFF2490 0.67 +0.3 549,833 + +0.0 549,847 + +0.1 549,867 + -0.4 549,867 + +0.0 549,885 + -0.6 549,885 + +1.9 549,885 + -0.3 549,885 + +0.3 549,885 + +0.8 549,885 + +0.2 549,886 - +0.3 549,886 - -0.5 549,886 - -0.1 549,886 - -0.5 549,886 - -0.3 549,886 - +0.1 549,886 - +1.1 549,886 - +0.3 549,886 - -1.3 549,886 - -0.9 550,064 + -1.1 550,139 + GFF2491 0.13 +2.4 550,139 + GFF2491 0.13 -0.4 550,139 + GFF2491 0.13 -0.7 550,139 + GFF2491 0.13 -0.2 550,140 - GFF2491 0.13 -1.3 550,178 + GFF2491 0.17 -0.9 550,178 + GFF2491 0.17 -0.9 550,178 + GFF2491 0.17 -0.9 550,178 + GFF2491 0.17 +0.8 550,179 - GFF2491 0.17 -0.2 550,406 + GFF2491 0.37 -1.3 550,406 + GFF2491 0.37 -0.5 550,446 - GFF2491 0.40 -0.7 550,466 + GFF2491 0.42 -0.3 550,466 + GFF2491 0.42 +1.0 550,466 + GFF2491 0.42 -0.7 550,466 + GFF2491 0.42 -1.0 550,467 - GFF2491 0.42 +0.6 550,467 - GFF2491 0.42 -1.0 550,467 - GFF2491 0.42 -0.9 550,467 - GFF2491 0.42 -0.5 550,467 - GFF2491 0.42 -0.1 550,467 - GFF2491 0.42 -0.3 550,503 - GFF2491 0.45 -0.2 550,556 + GFF2491 0.50 -0.8 550,583 + GFF2491 0.52 +0.4 550,583 + GFF2491 0.52 -0.7 550,583 + GFF2491 0.52 -1.0 550,584 - GFF2491 0.52 +0.3 550,584 - GFF2491 0.52 -0.6 550,584 - GFF2491 0.52 +0.8 550,620 + GFF2491 0.55 +1.1 550,620 + GFF2491 0.55 -1.0 550,620 + GFF2491 0.55 -1.1 550,620 + GFF2491 0.55 +0.3 550,620 + GFF2491 0.55 -0.7 550,620 + GFF2491 0.55 +0.0 550,621 - GFF2491 0.55 -1.0 550,621 - GFF2491 0.55 -0.7 550,621 - GFF2491 0.55 -0.2 550,621 - GFF2491 0.55 -1.8 550,621 - GFF2491 0.55 +1.4 550,621 - GFF2491 0.55 -0.0 550,628 + GFF2491 0.56 -0.3 550,628 + GFF2491 0.56 +1.0 550,629 - GFF2491 0.56 -0.4 550,629 - GFF2491 0.56 -0.1 550,629 - GFF2491 0.56 -0.5 550,629 - GFF2491 0.56 -0.7 550,629 - GFF2491 0.56 -2.7 550,629 - GFF2491 0.56 +0.1 550,721 + GFF2491 0.64 -0.2 550,722 - GFF2491 0.64 +1.4 550,722 - GFF2491 0.64 -0.2 550,722 - GFF2491 0.64 +0.1 550,722 - GFF2491 0.64 -1.0 550,722 - GFF2491 0.64 +0.2
Or see this region's nucleotide sequence