Strain Fitness in Variovorax sp. SCN45 around GFF1754

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1753 and GFF1754 are separated by 46 nucleotidesGFF1754 and GFF1755 overlap by 13 nucleotides GFF1753 - LysR family transcriptional regulator lrhA, at 414,157 to 415,050 GFF1753 GFF1754 - Nicel/Cobalt-specific TonB-dependent outer membrane receptor, at 415,097 to 417,193 GFF1754 GFF1755 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 417,181 to 418,719 GFF1755 Position (kb) 415 416 417 418Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 414.162 kb on + strandat 414.163 kb on - strandat 414.364 kb on + strand, within GFF1753at 414.375 kb on + strand, within GFF1753at 414.375 kb on + strand, within GFF1753at 414.375 kb on + strand, within GFF1753at 414.375 kb on + strand, within GFF1753at 414.375 kb on + strand, within GFF1753at 414.375 kb on + strand, within GFF1753at 414.375 kb on + strand, within GFF1753at 414.375 kb on + strand, within GFF1753at 414.375 kb on + strand, within GFF1753at 414.376 kb on - strand, within GFF1753at 414.376 kb on - strand, within GFF1753at 414.376 kb on - strand, within GFF1753at 414.376 kb on - strand, within GFF1753at 414.376 kb on - strand, within GFF1753at 414.376 kb on - strand, within GFF1753at 414.376 kb on - strand, within GFF1753at 414.376 kb on - strand, within GFF1753at 414.376 kb on - strand, within GFF1753at 414.376 kb on - strand, within GFF1753at 414.550 kb on + strand, within GFF1753at 414.550 kb on + strand, within GFF1753at 414.551 kb on - strand, within GFF1753at 414.676 kb on + strand, within GFF1753at 414.676 kb on + strand, within GFF1753at 414.676 kb on + strand, within GFF1753at 414.676 kb on + strand, within GFF1753at 414.676 kb on + strand, within GFF1753at 414.676 kb on + strand, within GFF1753at 414.676 kb on + strand, within GFF1753at 414.676 kb on + strand, within GFF1753at 414.676 kb on + strand, within GFF1753at 414.677 kb on - strand, within GFF1753at 414.677 kb on - strand, within GFF1753at 414.677 kb on - strand, within GFF1753at 414.677 kb on - strand, within GFF1753at 414.790 kb on + strand, within GFF1753at 414.790 kb on + strand, within GFF1753at 414.791 kb on - strand, within GFF1753at 414.791 kb on - strand, within GFF1753at 414.791 kb on - strand, within GFF1753at 414.931 kb on + strand, within GFF1753at 414.931 kb on + strand, within GFF1753at 414.932 kb on - strand, within GFF1753at 414.932 kb on - strand, within GFF1753at 414.940 kb on + strand, within GFF1753at 414.940 kb on + strand, within GFF1753at 414.940 kb on + strand, within GFF1753at 414.940 kb on + strand, within GFF1753at 414.940 kb on + strand, within GFF1753at 414.940 kb on + strand, within GFF1753at 414.940 kb on + strand, within GFF1753at 414.940 kb on + strand, within GFF1753at 414.940 kb on + strand, within GFF1753at 414.940 kb on + strand, within GFF1753at 414.940 kb on + strand, within GFF1753at 414.941 kb on - strand, within GFF1753at 414.941 kb on - strand, within GFF1753at 414.941 kb on - strand, within GFF1753at 414.941 kb on - strand, within GFF1753at 414.941 kb on - strand, within GFF1753at 414.941 kb on - strand, within GFF1753at 414.941 kb on - strand, within GFF1753at 414.941 kb on - strand, within GFF1753at 414.941 kb on - strand, within GFF1753at 414.941 kb on - strand, within GFF1753at 415.377 kb on - strand, within GFF1754at 415.475 kb on + strand, within GFF1754at 415.475 kb on + strand, within GFF1754at 415.475 kb on + strand, within GFF1754at 415.476 kb on - strand, within GFF1754at 415.538 kb on + strand, within GFF1754at 415.539 kb on - strand, within GFF1754at 415.539 kb on - strand, within GFF1754at 415.589 kb on + strand, within GFF1754at 415.823 kb on + strand, within GFF1754at 415.823 kb on + strand, within GFF1754at 415.823 kb on + strand, within GFF1754at 415.824 kb on - strand, within GFF1754at 415.824 kb on - strand, within GFF1754at 415.824 kb on - strand, within GFF1754at 415.824 kb on - strand, within GFF1754at 415.824 kb on - strand, within GFF1754at 415.824 kb on - strand, within GFF1754at 415.824 kb on - strand, within GFF1754at 415.995 kb on - strand, within GFF1754at 416.036 kb on + strand, within GFF1754at 416.036 kb on + strand, within GFF1754at 416.036 kb on + strand, within GFF1754at 416.036 kb on + strand, within GFF1754at 416.036 kb on + strand, within GFF1754at 416.036 kb on + strand, within GFF1754at 416.037 kb on - strand, within GFF1754at 416.037 kb on - strand, within GFF1754at 416.037 kb on - strand, within GFF1754at 416.037 kb on - strand, within GFF1754at 416.037 kb on - strand, within GFF1754at 416.037 kb on - strand, within GFF1754at 416.037 kb on - strand, within GFF1754at 416.037 kb on - strand, within GFF1754at 416.204 kb on + strand, within GFF1754at 416.204 kb on + strand, within GFF1754at 416.204 kb on + strand, within GFF1754at 416.205 kb on - strand, within GFF1754at 416.276 kb on + strand, within GFF1754at 416.276 kb on + strand, within GFF1754at 416.318 kb on + strand, within GFF1754at 416.318 kb on + strand, within GFF1754at 416.318 kb on + strand, within GFF1754at 416.319 kb on - strand, within GFF1754at 416.319 kb on - strand, within GFF1754at 416.319 kb on - strand, within GFF1754at 416.319 kb on - strand, within GFF1754at 416.319 kb on - strand, within GFF1754at 416.348 kb on + strand, within GFF1754at 416.348 kb on + strand, within GFF1754at 416.375 kb on + strand, within GFF1754at 416.375 kb on + strand, within GFF1754at 416.375 kb on + strand, within GFF1754at 416.375 kb on + strand, within GFF1754at 416.375 kb on + strand, within GFF1754at 416.376 kb on - strand, within GFF1754at 416.376 kb on - strand, within GFF1754at 416.376 kb on - strand, within GFF1754at 416.376 kb on - strand, within GFF1754at 416.376 kb on - strand, within GFF1754at 416.376 kb on - strand, within GFF1754at 416.466 kb on - strand, within GFF1754at 416.466 kb on - strand, within GFF1754at 416.466 kb on - strand, within GFF1754at 416.466 kb on - strand, within GFF1754at 416.466 kb on - strand, within GFF1754at 416.466 kb on - strand, within GFF1754at 416.481 kb on + strand, within GFF1754at 416.482 kb on - strand, within GFF1754at 416.482 kb on - strand, within GFF1754at 416.669 kb on + strand, within GFF1754at 416.669 kb on + strand, within GFF1754at 416.669 kb on + strand, within GFF1754at 416.669 kb on + strand, within GFF1754at 416.669 kb on + strand, within GFF1754at 416.670 kb on - strand, within GFF1754at 416.670 kb on - strand, within GFF1754at 416.831 kb on + strand, within GFF1754at 416.831 kb on + strand, within GFF1754at 416.831 kb on + strand, within GFF1754at 416.831 kb on + strand, within GFF1754at 416.831 kb on + strand, within GFF1754at 416.831 kb on + strand, within GFF1754at 416.832 kb on - strand, within GFF1754at 416.832 kb on - strand, within GFF1754at 416.832 kb on - strand, within GFF1754at 416.876 kb on + strand, within GFF1754at 416.876 kb on + strand, within GFF1754at 416.877 kb on - strand, within GFF1754at 416.877 kb on - strand, within GFF1754at 416.915 kb on + strand, within GFF1754at 416.915 kb on + strand, within GFF1754at 416.915 kb on + strand, within GFF1754at 416.915 kb on + strand, within GFF1754at 416.915 kb on + strand, within GFF1754at 416.915 kb on + strand, within GFF1754at 416.916 kb on - strand, within GFF1754at 416.916 kb on - strand, within GFF1754at 416.916 kb on - strand, within GFF1754at 416.916 kb on - strand, within GFF1754at 416.916 kb on - strand, within GFF1754at 416.916 kb on - strand, within GFF1754at 417.068 kb on + strandat 417.069 kb on - strandat 417.069 kb on - strandat 417.069 kb on - strandat 417.069 kb on - strandat 417.069 kb on - strandat 417.071 kb on + strandat 417.071 kb on + strandat 417.071 kb on + strandat 417.071 kb on + strandat 417.071 kb on + strandat 417.071 kb on + strandat 417.071 kb on + strandat 417.071 kb on + strandat 417.071 kb on + strandat 417.072 kb on - strandat 417.072 kb on - strandat 417.074 kb on + strandat 417.074 kb on + strandat 417.074 kb on + strandat 417.074 kb on + strandat 417.075 kb on - strandat 417.183 kb on - strandat 417.183 kb on - strandat 417.183 kb on - strandat 417.206 kb on + strandat 417.206 kb on + strandat 417.206 kb on + strandat 417.206 kb on + strandat 417.206 kb on + strandat 417.207 kb on - strandat 417.207 kb on - strandat 417.207 kb on - strandat 417.207 kb on - strandat 417.207 kb on - strandat 417.207 kb on - strandat 417.207 kb on - strandat 417.207 kb on - strandat 417.207 kb on - strandat 417.207 kb on - strandat 417.207 kb on - strandat 417.207 kb on - strandat 417.207 kb on - strandat 417.207 kb on - strandat 417.207 kb on - strandat 417.236 kb on + strandat 417.236 kb on + strandat 417.236 kb on + strandat 417.237 kb on - strandat 417.237 kb on - strandat 417.237 kb on - strandat 417.237 kb on - strandat 417.237 kb on - strandat 417.575 kb on + strand, within GFF1755at 417.575 kb on + strand, within GFF1755at 417.575 kb on + strand, within GFF1755at 417.575 kb on + strand, within GFF1755at 417.576 kb on - strand, within GFF1755at 417.576 kb on - strand, within GFF1755at 417.576 kb on - strand, within GFF1755at 417.576 kb on - strand, within GFF1755at 417.576 kb on - strand, within GFF1755at 417.576 kb on - strand, within GFF1755

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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414,162 + -0.1
414,163 - -0.5
414,364 + GFF1753 0.23 -0.1
414,375 + GFF1753 0.24 -0.1
414,375 + GFF1753 0.24 +0.9
414,375 + GFF1753 0.24 -0.2
414,375 + GFF1753 0.24 -0.4
414,375 + GFF1753 0.24 +0.1
414,375 + GFF1753 0.24 -0.6
414,375 + GFF1753 0.24 +0.8
414,375 + GFF1753 0.24 -0.4
414,375 + GFF1753 0.24 -0.2
414,376 - GFF1753 0.24 -0.8
414,376 - GFF1753 0.24 -1.3
414,376 - GFF1753 0.24 +1.1
414,376 - GFF1753 0.24 +0.1
414,376 - GFF1753 0.24 +0.3
414,376 - GFF1753 0.24 -0.1
414,376 - GFF1753 0.24 -1.5
414,376 - GFF1753 0.24 -0.1
414,376 - GFF1753 0.24 -0.2
414,376 - GFF1753 0.24 -0.8
414,550 + GFF1753 0.44 -0.5
414,550 + GFF1753 0.44 +0.2
414,551 - GFF1753 0.44 +0.2
414,676 + GFF1753 0.58 -1.1
414,676 + GFF1753 0.58 +0.4
414,676 + GFF1753 0.58 -0.3
414,676 + GFF1753 0.58 -0.1
414,676 + GFF1753 0.58 -0.6
414,676 + GFF1753 0.58 +0.8
414,676 + GFF1753 0.58 +0.6
414,676 + GFF1753 0.58 -0.3
414,676 + GFF1753 0.58 +0.2
414,677 - GFF1753 0.58 -0.8
414,677 - GFF1753 0.58 +2.1
414,677 - GFF1753 0.58 -0.1
414,677 - GFF1753 0.58 +0.0
414,790 + GFF1753 0.71 -0.3
414,790 + GFF1753 0.71 +1.2
414,791 - GFF1753 0.71 -0.9
414,791 - GFF1753 0.71 -0.2
414,791 - GFF1753 0.71 -0.6
414,931 + GFF1753 0.87 -0.2
414,931 + GFF1753 0.87 -0.1
414,932 - GFF1753 0.87 -0.3
414,932 - GFF1753 0.87 +1.8
414,940 + GFF1753 0.88 -1.1
414,940 + GFF1753 0.88 -0.7
414,940 + GFF1753 0.88 -0.7
414,940 + GFF1753 0.88 +0.0
414,940 + GFF1753 0.88 -2.2
414,940 + GFF1753 0.88 -0.7
414,940 + GFF1753 0.88 -0.3
414,940 + GFF1753 0.88 +0.2
414,940 + GFF1753 0.88 +0.2
414,940 + GFF1753 0.88 -1.5
414,940 + GFF1753 0.88 +0.5
414,941 - GFF1753 0.88 +0.5
414,941 - GFF1753 0.88 +0.0
414,941 - GFF1753 0.88 -0.5
414,941 - GFF1753 0.88 -1.1
414,941 - GFF1753 0.88 -0.1
414,941 - GFF1753 0.88 +0.0
414,941 - GFF1753 0.88 +0.1
414,941 - GFF1753 0.88 -0.2
414,941 - GFF1753 0.88 -0.4
414,941 - GFF1753 0.88 +0.3
415,377 - GFF1754 0.13 -0.5
415,475 + GFF1754 0.18 -2.0
415,475 + GFF1754 0.18 +0.2
415,475 + GFF1754 0.18 -1.4
415,476 - GFF1754 0.18 -0.8
415,538 + GFF1754 0.21 +0.6
415,539 - GFF1754 0.21 +0.3
415,539 - GFF1754 0.21 -0.2
415,589 + GFF1754 0.23 -0.9
415,823 + GFF1754 0.35 -0.1
415,823 + GFF1754 0.35 -0.7
415,823 + GFF1754 0.35 -0.9
415,824 - GFF1754 0.35 -0.0
415,824 - GFF1754 0.35 +0.9
415,824 - GFF1754 0.35 -0.2
415,824 - GFF1754 0.35 +0.2
415,824 - GFF1754 0.35 +0.4
415,824 - GFF1754 0.35 -1.7
415,824 - GFF1754 0.35 +0.4
415,995 - GFF1754 0.43 -0.8
416,036 + GFF1754 0.45 -2.9
416,036 + GFF1754 0.45 -0.6
416,036 + GFF1754 0.45 -0.1
416,036 + GFF1754 0.45 -0.1
416,036 + GFF1754 0.45 -1.4
416,036 + GFF1754 0.45 +0.4
416,037 - GFF1754 0.45 +0.2
416,037 - GFF1754 0.45 -0.6
416,037 - GFF1754 0.45 -1.0
416,037 - GFF1754 0.45 +0.8
416,037 - GFF1754 0.45 -0.3
416,037 - GFF1754 0.45 +0.3
416,037 - GFF1754 0.45 -1.0
416,037 - GFF1754 0.45 +0.8
416,204 + GFF1754 0.53 -0.4
416,204 + GFF1754 0.53 -0.2
416,204 + GFF1754 0.53 -0.1
416,205 - GFF1754 0.53 -0.7
416,276 + GFF1754 0.56 -0.7
416,276 + GFF1754 0.56 +1.8
416,318 + GFF1754 0.58 +0.0
416,318 + GFF1754 0.58 +0.6
416,318 + GFF1754 0.58 -1.1
416,319 - GFF1754 0.58 -0.5
416,319 - GFF1754 0.58 -0.5
416,319 - GFF1754 0.58 +0.1
416,319 - GFF1754 0.58 -0.4
416,319 - GFF1754 0.58 -0.6
416,348 + GFF1754 0.60 -0.2
416,348 + GFF1754 0.60 -1.2
416,375 + GFF1754 0.61 -0.7
416,375 + GFF1754 0.61 +0.2
416,375 + GFF1754 0.61 -1.0
416,375 + GFF1754 0.61 -1.1
416,375 + GFF1754 0.61 -0.2
416,376 - GFF1754 0.61 -0.6
416,376 - GFF1754 0.61 -1.4
416,376 - GFF1754 0.61 +0.2
416,376 - GFF1754 0.61 -0.8
416,376 - GFF1754 0.61 -0.8
416,376 - GFF1754 0.61 -1.3
416,466 - GFF1754 0.65 -1.8
416,466 - GFF1754 0.65 -0.8
416,466 - GFF1754 0.65 -1.2
416,466 - GFF1754 0.65 -0.2
416,466 - GFF1754 0.65 -0.8
416,466 - GFF1754 0.65 -0.8
416,481 + GFF1754 0.66 +0.0
416,482 - GFF1754 0.66 -0.3
416,482 - GFF1754 0.66 -0.3
416,669 + GFF1754 0.75 +0.2
416,669 + GFF1754 0.75 -0.4
416,669 + GFF1754 0.75 -0.7
416,669 + GFF1754 0.75 -0.3
416,669 + GFF1754 0.75 -0.2
416,670 - GFF1754 0.75 +0.2
416,670 - GFF1754 0.75 -0.9
416,831 + GFF1754 0.83 -0.2
416,831 + GFF1754 0.83 +0.8
416,831 + GFF1754 0.83 +0.4
416,831 + GFF1754 0.83 +1.2
416,831 + GFF1754 0.83 -0.4
416,831 + GFF1754 0.83 +0.8
416,832 - GFF1754 0.83 +0.8
416,832 - GFF1754 0.83 +0.8
416,832 - GFF1754 0.83 -0.3
416,876 + GFF1754 0.85 -1.2
416,876 + GFF1754 0.85 -0.4
416,877 - GFF1754 0.85 +0.6
416,877 - GFF1754 0.85 -0.9
416,915 + GFF1754 0.87 -0.6
416,915 + GFF1754 0.87 -0.5
416,915 + GFF1754 0.87 +0.0
416,915 + GFF1754 0.87 -0.0
416,915 + GFF1754 0.87 -0.1
416,915 + GFF1754 0.87 +0.8
416,916 - GFF1754 0.87 -0.1
416,916 - GFF1754 0.87 -1.4
416,916 - GFF1754 0.87 -0.6
416,916 - GFF1754 0.87 -0.5
416,916 - GFF1754 0.87 -2.3
416,916 - GFF1754 0.87 +0.1
417,068 + -0.2
417,069 - -1.0
417,069 - -0.2
417,069 - -1.4
417,069 - -0.4
417,069 - +1.5
417,071 + -1.8
417,071 + +0.1
417,071 + -0.3
417,071 + +1.3
417,071 + -0.8
417,071 + -0.0
417,071 + +0.2
417,071 + -0.2
417,071 + -0.9
417,072 - -0.3
417,072 - -0.0
417,074 + -0.9
417,074 + -0.3
417,074 + -0.9
417,074 + -0.6
417,075 - -0.3
417,183 - +0.9
417,183 - +0.8
417,183 - +0.8
417,206 + -0.3
417,206 + -0.5
417,206 + -0.7
417,206 + -0.4
417,206 + -2.3
417,207 - +0.5
417,207 - -0.0
417,207 - -0.9
417,207 - -0.0
417,207 - -0.7
417,207 - -0.5
417,207 - +0.3
417,207 - -1.8
417,207 - +0.6
417,207 - -0.3
417,207 - -0.7
417,207 - -1.9
417,207 - -0.0
417,207 - -0.2
417,207 - +0.2
417,236 + -0.3
417,236 + -0.3
417,236 + -0.2
417,237 - -1.1
417,237 - +0.2
417,237 - +1.5
417,237 - -0.1
417,237 - -0.1
417,575 + GFF1755 0.26 +0.1
417,575 + GFF1755 0.26 +0.1
417,575 + GFF1755 0.26 -0.4
417,575 + GFF1755 0.26 -1.5
417,576 - GFF1755 0.26 -0.0
417,576 - GFF1755 0.26 +0.8
417,576 - GFF1755 0.26 +0.8
417,576 - GFF1755 0.26 -0.1
417,576 - GFF1755 0.26 -2.1
417,576 - GFF1755 0.26 -0.6

Or see this region's nucleotide sequence