Strain Fitness in Variovorax sp. SCN45 around GFF1501

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
92,826	+				+0.4
92,826	+				+1.0
92,826	+				-2.2
92,826	+				+1.7
92,827	-				-1.4
92,827	-				+1.2
93,117	+		GFF1500	0.30	-0.4
93,117	+		GFF1500	0.30	-0.2
93,118	-		GFF1500	0.30	+0.5
93,118	-		GFF1500	0.30	+0.3
93,267	+		GFF1500	0.49	-0.6
93,267	+		GFF1500	0.49	+0.7
93,267	+		GFF1500	0.49	+0.2
93,267	+		GFF1500	0.49	-0.6
93,267	+		GFF1500	0.49	+0.7
93,267	+		GFF1500	0.49	-0.8
93,268	-		GFF1500	0.49	+0.0
93,268	-		GFF1500	0.49	-1.6
93,268	-		GFF1500	0.49	-1.5
93,420	+		GFF1500	0.67	+0.2
93,420	+		GFF1500	0.67	-1.3
93,420	+		GFF1500	0.67	+0.6
93,421	-		GFF1500	0.68	-1.5
93,421	-		GFF1500	0.68	-1.3
93,444	+		GFF1500	0.70	+0.2
93,444	+		GFF1500	0.70	-1.6
93,445	-		GFF1500	0.70	-0.3
93,445	-		GFF1500	0.70	+0.5
93,445	-		GFF1500	0.70	+0.9
93,445	-		GFF1500	0.70	-0.8
93,445	-		GFF1500	0.70	-0.4
93,621	+				+0.2
93,622	-				+1.4
93,681	+				-0.3
93,682	-				-0.3
93,682	-				-0.2
93,682	-				-0.6
93,682	-				-0.4
93,682	-				+0.7
93,682	-				-0.5
93,727	-				-2.0
93,727	-				-1.8
93,840	+		GFF1501	0.11	-0.7
93,874	+		GFF1501	0.24	-0.2
93,874	-		GFF1501	0.24	-1.3
93,942	+		GFF1501	0.51	+0.9
93,942	+		GFF1501	0.51	-0.5
93,942	+		GFF1501	0.51	+0.2
93,943	-		GFF1501	0.51	-1.0
94,034	-		GFF1501	0.87	-1.4
94,124	+				+0.6
94,124	+				+0.3
94,125	-				+0.7
94,125	-				+1.7
94,125	-				+0.5
94,196	+				+0.5
94,196	+				-2.6
94,196	+				+1.3
94,197	-				+0.3
94,197	-				+0.3
94,282	+				+0.7
94,283	-				-0.0
94,528	+				-1.7
94,528	+				-0.6
94,531	-				+0.7
94,531	-				+0.3
94,532	+				-1.4
94,585	-				+0.2
94,588	+				+1.2
94,620	+				-0.6
94,620	+				-1.1
94,620	+				-1.4
94,620	+				-1.1
94,620	+				-1.4
94,620	+				-0.4
94,621	-				-0.7
94,621	-				-0.3
94,621	-				-0.3
94,621	-				+0.8
94,621	-				+1.4
94,659	+		GFF1503	0.13	-0.2
94,659	+		GFF1503	0.13	-0.2
94,659	-		GFF1503	0.13	+0.0
94,716	+		GFF1503	0.22	+0.6
94,717	-		GFF1503	0.22	-0.5
94,884	+		GFF1503	0.48	-0.2
94,884	+		GFF1503	0.48	+1.0
94,885	-		GFF1503	0.48	-0.3
94,885	-		GFF1503	0.48	+0.2
94,885	-		GFF1503	0.48	-0.4
94,885	-		GFF1503	0.48	-2.1
94,885	-		GFF1503	0.48	-1.1
94,885	-		GFF1503	0.48	+0.8
94,885	-		GFF1503	0.48	-0.6
94,941	+		GFF1503	0.57	-0.3
94,942	-		GFF1503	0.58	-0.2
95,043	+		GFF1503	0.73	+0.2
95,043	+		GFF1503	0.73	-0.1
95,044	-		GFF1503	0.74	-0.6