Strain Fitness in Variovorax sp. SCN45 around GFF1342

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1340 and GFF1341 are separated by 1 nucleotidesGFF1341 and GFF1342 are separated by 150 nucleotidesGFF1342 and GFF1343 are separated by 31 nucleotides GFF1340 - ABC transporter, ATP-binding protein 1 RSc1753, at 682,232 to 683,002 GFF1340 GFF1341 - ABC transporter, ATP-binding protein 2 RSc1754, at 683,004 to 683,699 GFF1341 GFF1342 - Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3), at 683,850 to 685,955 GFF1342 GFF1343 - macromolecule metabolism; macromolecule degradation; degradation of proteins, peptides, glycopeptides, at 685,987 to 687,462 GFF1343 Position (kb) 683 684 685 686Strain fitness (log2 ratio) -2 -1 0 1at 682.892 kb on + strand, within GFF1340at 682.958 kb on + strandat 682.958 kb on + strandat 682.959 kb on - strandat 682.959 kb on - strandat 683.031 kb on + strandat 683.032 kb on - strandat 683.035 kb on - strandat 683.211 kb on + strand, within GFF1341at 683.212 kb on - strand, within GFF1341at 683.212 kb on - strand, within GFF1341at 683.239 kb on - strand, within GFF1341at 683.239 kb on - strand, within GFF1341at 683.346 kb on + strand, within GFF1341at 683.346 kb on + strand, within GFF1341at 683.346 kb on + strand, within GFF1341at 683.346 kb on + strand, within GFF1341at 683.346 kb on + strand, within GFF1341at 683.346 kb on + strand, within GFF1341at 683.346 kb on + strand, within GFF1341at 683.346 kb on + strand, within GFF1341at 683.346 kb on + strand, within GFF1341at 683.346 kb on + strand, within GFF1341at 683.346 kb on + strand, within GFF1341at 683.346 kb on + strand, within GFF1341at 683.347 kb on - strand, within GFF1341at 683.347 kb on - strand, within GFF1341at 683.347 kb on - strand, within GFF1341at 683.347 kb on - strand, within GFF1341at 683.347 kb on - strand, within GFF1341at 683.347 kb on - strand, within GFF1341at 683.347 kb on - strand, within GFF1341at 683.347 kb on - strand, within GFF1341at 683.347 kb on - strand, within GFF1341at 683.520 kb on + strand, within GFF1341at 683.521 kb on - strand, within GFF1341at 683.701 kb on - strandat 683.743 kb on + strandat 683.744 kb on - strandat 683.744 kb on - strandat 683.784 kb on - strandat 683.862 kb on + strandat 683.862 kb on + strandat 683.863 kb on - strandat 683.863 kb on - strandat 683.863 kb on - strandat 684.184 kb on - strand, within GFF1342at 684.502 kb on - strand, within GFF1342at 684.502 kb on - strand, within GFF1342at 684.502 kb on - strand, within GFF1342at 684.546 kb on + strand, within GFF1342at 684.885 kb on + strand, within GFF1342at 684.885 kb on + strand, within GFF1342at 684.885 kb on + strand, within GFF1342at 684.886 kb on - strand, within GFF1342at 684.886 kb on - strand, within GFF1342at 684.927 kb on + strand, within GFF1342at 684.927 kb on + strand, within GFF1342at 684.927 kb on + strand, within GFF1342at 684.927 kb on + strand, within GFF1342at 684.927 kb on + strand, within GFF1342at 685.323 kb on + strand, within GFF1342at 685.323 kb on + strand, within GFF1342at 685.323 kb on + strand, within GFF1342at 685.323 kb on + strand, within GFF1342at 685.323 kb on + strand, within GFF1342at 685.324 kb on - strand, within GFF1342at 685.324 kb on - strand, within GFF1342at 685.324 kb on - strand, within GFF1342at 685.497 kb on + strand, within GFF1342at 685.498 kb on - strand, within GFF1342at 685.498 kb on - strand, within GFF1342at 685.498 kb on - strand, within GFF1342at 685.563 kb on + strand, within GFF1342at 685.569 kb on + strand, within GFF1342at 685.570 kb on - strand, within GFF1342at 685.695 kb on + strand, within GFF1342at 685.695 kb on + strand, within GFF1342at 685.695 kb on + strand, within GFF1342at 685.696 kb on - strand, within GFF1342at 685.696 kb on - strand, within GFF1342at 685.696 kb on - strand, within GFF1342at 685.770 kb on + strandat 685.770 kb on + strandat 685.770 kb on + strandat 685.771 kb on - strandat 685.771 kb on - strandat 685.771 kb on - strandat 685.818 kb on + strandat 685.818 kb on + strandat 685.819 kb on - strandat 685.839 kb on + strandat 685.839 kb on + strandat 685.839 kb on + strandat 685.839 kb on + strandat 685.840 kb on - strandat 685.840 kb on - strandat 686.221 kb on + strand, within GFF1343at 686.222 kb on - strand, within GFF1343at 686.293 kb on + strand, within GFF1343at 686.293 kb on + strand, within GFF1343at 686.294 kb on - strand, within GFF1343at 686.294 kb on - strand, within GFF1343at 686.425 kb on + strand, within GFF1343at 686.425 kb on + strand, within GFF1343at 686.530 kb on + strand, within GFF1343at 686.530 kb on + strand, within GFF1343at 686.530 kb on + strand, within GFF1343at 686.531 kb on - strand, within GFF1343at 686.661 kb on - strand, within GFF1343at 686.714 kb on - strand, within GFF1343

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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682,892 + GFF1340 0.86 +0.6
682,958 + +0.4
682,958 + -1.3
682,959 - -0.6
682,959 - -0.5
683,031 + -1.3
683,032 - -0.2
683,035 - -1.6
683,211 + GFF1341 0.30 -0.3
683,212 - GFF1341 0.30 +0.4
683,212 - GFF1341 0.30 -1.7
683,239 - GFF1341 0.34 -0.2
683,239 - GFF1341 0.34 +0.4
683,346 + GFF1341 0.49 -0.8
683,346 + GFF1341 0.49 -1.7
683,346 + GFF1341 0.49 -0.3
683,346 + GFF1341 0.49 +0.6
683,346 + GFF1341 0.49 -1.2
683,346 + GFF1341 0.49 -0.8
683,346 + GFF1341 0.49 +0.1
683,346 + GFF1341 0.49 +0.4
683,346 + GFF1341 0.49 -0.5
683,346 + GFF1341 0.49 -1.3
683,346 + GFF1341 0.49 +0.0
683,346 + GFF1341 0.49 -0.7
683,347 - GFF1341 0.49 -0.9
683,347 - GFF1341 0.49 +0.0
683,347 - GFF1341 0.49 -2.0
683,347 - GFF1341 0.49 +0.1
683,347 - GFF1341 0.49 -0.3
683,347 - GFF1341 0.49 -1.8
683,347 - GFF1341 0.49 +0.0
683,347 - GFF1341 0.49 -0.1
683,347 - GFF1341 0.49 -0.7
683,520 + GFF1341 0.74 -0.4
683,521 - GFF1341 0.74 +0.6
683,701 - +0.6
683,743 + +0.1
683,744 - +0.1
683,744 - -0.8
683,784 - -1.4
683,862 + -0.5
683,862 + +0.7
683,863 - -0.2
683,863 - +1.4
683,863 - +0.4
684,184 - GFF1342 0.16 +1.1
684,502 - GFF1342 0.31 -0.2
684,502 - GFF1342 0.31 +0.5
684,502 - GFF1342 0.31 +0.2
684,546 + GFF1342 0.33 +0.6
684,885 + GFF1342 0.49 -0.7
684,885 + GFF1342 0.49 -0.3
684,885 + GFF1342 0.49 -0.6
684,886 - GFF1342 0.49 +0.7
684,886 - GFF1342 0.49 +0.4
684,927 + GFF1342 0.51 -0.4
684,927 + GFF1342 0.51 -0.6
684,927 + GFF1342 0.51 +0.2
684,927 + GFF1342 0.51 +0.2
684,927 + GFF1342 0.51 -0.0
685,323 + GFF1342 0.70 +0.4
685,323 + GFF1342 0.70 -0.6
685,323 + GFF1342 0.70 +0.9
685,323 + GFF1342 0.70 +0.9
685,323 + GFF1342 0.70 -0.6
685,324 - GFF1342 0.70 -0.8
685,324 - GFF1342 0.70 -0.1
685,324 - GFF1342 0.70 -0.7
685,497 + GFF1342 0.78 -1.5
685,498 - GFF1342 0.78 -0.8
685,498 - GFF1342 0.78 -0.8
685,498 - GFF1342 0.78 +0.7
685,563 + GFF1342 0.81 +0.7
685,569 + GFF1342 0.82 +1.1
685,570 - GFF1342 0.82 +1.0
685,695 + GFF1342 0.88 +0.8
685,695 + GFF1342 0.88 +0.8
685,695 + GFF1342 0.88 -0.9
685,696 - GFF1342 0.88 -1.8
685,696 - GFF1342 0.88 -0.2
685,696 - GFF1342 0.88 +0.7
685,770 + -0.6
685,770 + -0.4
685,770 + +0.0
685,771 - -0.3
685,771 - -0.1
685,771 - -0.3
685,818 + -0.2
685,818 + -0.8
685,819 - -0.7
685,839 + +0.1
685,839 + +0.7
685,839 + -1.5
685,839 + -0.8
685,840 - +1.4
685,840 - +0.4
686,221 + GFF1343 0.16 -0.5
686,222 - GFF1343 0.16 -1.0
686,293 + GFF1343 0.21 -0.4
686,293 + GFF1343 0.21 -0.6
686,294 - GFF1343 0.21 -0.8
686,294 - GFF1343 0.21 -0.6
686,425 + GFF1343 0.30 +0.7
686,425 + GFF1343 0.30 +0.1
686,530 + GFF1343 0.37 -0.2
686,530 + GFF1343 0.37 +0.0
686,530 + GFF1343 0.37 +0.1
686,531 - GFF1343 0.37 -0.4
686,661 - GFF1343 0.46 +0.6
686,714 - GFF1343 0.49 +0.1

Or see this region's nucleotide sequence