Strain Fitness in Variovorax sp. SCN45 around GFF1333

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1331 and GFF1332 are separated by 14 nucleotidesGFF1332 and GFF1333 are separated by 3 nucleotidesGFF1333 and GFF1334 are separated by 46 nucleotides GFF1331 - Transcriptional regulator, AraC family, at 670,293 to 671,372 GFF1331 GFF1332 - no description, at 671,387 to 671,518 GFF1332 GFF1333 - para-nitrobenzyl esterase (intracellular esterase B), at 671,522 to 673,354 GFF1333 GFF1334 - Cocaine esterase (EC 3.1.1.-), at 673,401 to 675,287 GFF1334 Position (kb) 671 672 673 674Strain fitness (log2 ratio) -2 -1 0 1 2at 670.699 kb on + strand, within GFF1331at 670.699 kb on + strand, within GFF1331at 670.699 kb on + strand, within GFF1331at 670.699 kb on + strand, within GFF1331at 670.699 kb on + strand, within GFF1331at 670.699 kb on + strand, within GFF1331at 670.699 kb on + strand, within GFF1331at 670.700 kb on - strand, within GFF1331at 670.700 kb on - strand, within GFF1331at 670.700 kb on - strand, within GFF1331at 670.700 kb on - strand, within GFF1331at 670.700 kb on - strand, within GFF1331at 670.700 kb on - strand, within GFF1331at 670.898 kb on - strand, within GFF1331at 671.014 kb on + strand, within GFF1331at 671.014 kb on + strand, within GFF1331at 671.014 kb on + strand, within GFF1331at 671.014 kb on + strand, within GFF1331at 671.015 kb on - strand, within GFF1331at 671.015 kb on - strand, within GFF1331at 671.015 kb on - strand, within GFF1331at 671.015 kb on - strand, within GFF1331at 671.289 kb on + strandat 671.289 kb on + strandat 671.289 kb on + strandat 671.289 kb on + strandat 671.289 kb on + strandat 671.289 kb on + strandat 671.289 kb on + strandat 671.289 kb on + strandat 671.289 kb on + strandat 671.290 kb on - strandat 671.290 kb on - strandat 671.410 kb on + strand, within GFF1332at 671.436 kb on - strand, within GFF1332at 671.466 kb on + strand, within GFF1332at 671.466 kb on + strand, within GFF1332at 671.466 kb on + strand, within GFF1332at 671.466 kb on + strand, within GFF1332at 671.466 kb on + strand, within GFF1332at 671.467 kb on - strand, within GFF1332at 671.527 kb on + strandat 671.527 kb on + strandat 671.527 kb on + strandat 671.527 kb on + strandat 671.527 kb on + strandat 671.528 kb on - strandat 671.528 kb on - strandat 671.528 kb on - strandat 671.528 kb on - strandat 671.528 kb on - strandat 671.528 kb on - strandat 671.954 kb on + strand, within GFF1333at 671.954 kb on + strand, within GFF1333at 671.954 kb on + strand, within GFF1333at 671.954 kb on + strand, within GFF1333at 671.954 kb on + strand, within GFF1333at 671.955 kb on - strand, within GFF1333at 671.955 kb on - strand, within GFF1333at 671.955 kb on - strand, within GFF1333at 671.955 kb on - strand, within GFF1333at 671.955 kb on - strand, within GFF1333at 671.955 kb on - strand, within GFF1333at 671.955 kb on - strand, within GFF1333at 671.955 kb on - strand, within GFF1333at 671.955 kb on - strand, within GFF1333at 672.066 kb on + strand, within GFF1333at 672.085 kb on + strand, within GFF1333at 672.086 kb on - strand, within GFF1333at 672.086 kb on - strand, within GFF1333at 672.095 kb on + strand, within GFF1333at 672.113 kb on + strand, within GFF1333at 672.113 kb on + strand, within GFF1333at 672.113 kb on + strand, within GFF1333at 672.114 kb on - strand, within GFF1333at 672.114 kb on - strand, within GFF1333at 672.167 kb on + strand, within GFF1333at 672.168 kb on - strand, within GFF1333at 672.569 kb on + strand, within GFF1333at 672.569 kb on + strand, within GFF1333at 672.569 kb on + strand, within GFF1333at 672.569 kb on + strand, within GFF1333at 672.569 kb on + strand, within GFF1333at 672.569 kb on + strand, within GFF1333at 672.570 kb on - strand, within GFF1333at 672.570 kb on - strand, within GFF1333at 672.570 kb on - strand, within GFF1333at 672.606 kb on - strand, within GFF1333at 672.606 kb on - strand, within GFF1333at 672.734 kb on + strand, within GFF1333at 672.734 kb on + strand, within GFF1333at 672.734 kb on + strand, within GFF1333at 672.734 kb on + strand, within GFF1333at 672.734 kb on + strand, within GFF1333at 672.734 kb on + strand, within GFF1333at 672.734 kb on + strand, within GFF1333at 672.734 kb on + strand, within GFF1333at 672.734 kb on + strand, within GFF1333at 672.735 kb on - strand, within GFF1333at 672.735 kb on - strand, within GFF1333at 672.735 kb on - strand, within GFF1333at 672.735 kb on - strand, within GFF1333at 672.735 kb on - strand, within GFF1333at 672.735 kb on - strand, within GFF1333at 672.735 kb on - strand, within GFF1333at 672.923 kb on + strand, within GFF1333at 672.923 kb on + strand, within GFF1333at 672.923 kb on + strand, within GFF1333at 672.923 kb on + strand, within GFF1333at 672.924 kb on - strand, within GFF1333at 672.924 kb on - strand, within GFF1333at 672.953 kb on + strand, within GFF1333at 672.954 kb on - strand, within GFF1333at 673.097 kb on + strand, within GFF1333at 673.097 kb on + strand, within GFF1333at 673.097 kb on + strand, within GFF1333at 673.097 kb on + strand, within GFF1333at 673.097 kb on + strand, within GFF1333at 673.097 kb on + strand, within GFF1333at 673.097 kb on + strand, within GFF1333at 673.097 kb on + strand, within GFF1333at 673.097 kb on + strand, within GFF1333at 673.097 kb on + strand, within GFF1333at 673.097 kb on + strand, within GFF1333at 673.097 kb on + strand, within GFF1333at 673.097 kb on + strand, within GFF1333at 673.097 kb on + strand, within GFF1333at 673.098 kb on - strand, within GFF1333at 673.098 kb on - strand, within GFF1333at 673.098 kb on - strand, within GFF1333at 673.098 kb on - strand, within GFF1333at 673.098 kb on - strand, within GFF1333at 673.098 kb on - strand, within GFF1333at 673.584 kb on + strandat 673.584 kb on + strandat 673.584 kb on + strandat 673.585 kb on - strandat 673.585 kb on - strandat 673.585 kb on - strandat 673.585 kb on - strandat 673.617 kb on + strand, within GFF1334at 673.617 kb on + strand, within GFF1334at 673.617 kb on + strand, within GFF1334at 673.669 kb on - strand, within GFF1334at 673.669 kb on - strand, within GFF1334at 673.669 kb on - strand, within GFF1334at 673.677 kb on + strand, within GFF1334at 673.728 kb on + strand, within GFF1334at 673.728 kb on + strand, within GFF1334at 673.728 kb on + strand, within GFF1334at 673.729 kb on - strand, within GFF1334at 673.729 kb on - strand, within GFF1334at 673.884 kb on + strand, within GFF1334at 673.884 kb on + strand, within GFF1334at 673.885 kb on - strand, within GFF1334at 673.885 kb on - strand, within GFF1334at 673.893 kb on + strand, within GFF1334at 673.893 kb on + strand, within GFF1334at 673.894 kb on - strand, within GFF1334at 673.971 kb on + strand, within GFF1334at 673.971 kb on + strand, within GFF1334at 674.175 kb on + strand, within GFF1334at 674.190 kb on + strand, within GFF1334at 674.190 kb on + strand, within GFF1334at 674.191 kb on - strand, within GFF1334at 674.191 kb on - strand, within GFF1334at 674.191 kb on - strand, within GFF1334at 674.191 kb on - strand, within GFF1334at 674.191 kb on - strand, within GFF1334at 674.191 kb on - strand, within GFF1334at 674.191 kb on - strand, within GFF1334at 674.289 kb on + strand, within GFF1334at 674.292 kb on + strand, within GFF1334at 674.292 kb on + strand, within GFF1334at 674.293 kb on - strand, within GFF1334at 674.293 kb on - strand, within GFF1334at 674.293 kb on - strand, within GFF1334

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
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670,699 + GFF1331 0.38 -0.3
670,699 + GFF1331 0.38 -1.3
670,699 + GFF1331 0.38 -2.1
670,699 + GFF1331 0.38 +0.2
670,699 + GFF1331 0.38 -0.2
670,699 + GFF1331 0.38 -1.3
670,699 + GFF1331 0.38 +1.5
670,700 - GFF1331 0.38 +0.6
670,700 - GFF1331 0.38 +1.4
670,700 - GFF1331 0.38 +0.2
670,700 - GFF1331 0.38 +0.6
670,700 - GFF1331 0.38 -1.2
670,700 - GFF1331 0.38 +1.4
670,898 - GFF1331 0.56 +0.2
671,014 + GFF1331 0.67 -0.2
671,014 + GFF1331 0.67 -0.8
671,014 + GFF1331 0.67 +0.6
671,014 + GFF1331 0.67 -0.6
671,015 - GFF1331 0.67 +0.5
671,015 - GFF1331 0.67 -0.5
671,015 - GFF1331 0.67 -0.5
671,015 - GFF1331 0.67 -0.4
671,289 + -0.7
671,289 + +0.2
671,289 + -0.6
671,289 + -0.1
671,289 + +0.8
671,289 + -0.6
671,289 + +0.1
671,289 + -0.2
671,289 + +1.7
671,290 - +1.7
671,290 - -1.2
671,410 + GFF1332 0.17 -0.4
671,436 - GFF1332 0.37 -0.3
671,466 + GFF1332 0.60 +0.3
671,466 + GFF1332 0.60 +1.6
671,466 + GFF1332 0.60 +2.7
671,466 + GFF1332 0.60 +1.0
671,466 + GFF1332 0.60 +0.2
671,467 - GFF1332 0.61 -0.6
671,527 + -0.9
671,527 + -1.4
671,527 + -1.4
671,527 + -0.6
671,527 + -0.6
671,528 - +1.4
671,528 - -1.2
671,528 - -0.8
671,528 - +0.2
671,528 - -2.3
671,528 - -0.9
671,954 + GFF1333 0.24 +0.3
671,954 + GFF1333 0.24 -0.3
671,954 + GFF1333 0.24 -0.9
671,954 + GFF1333 0.24 -2.5
671,954 + GFF1333 0.24 -1.5
671,955 - GFF1333 0.24 -0.9
671,955 - GFF1333 0.24 -0.0
671,955 - GFF1333 0.24 +1.1
671,955 - GFF1333 0.24 -0.7
671,955 - GFF1333 0.24 +0.2
671,955 - GFF1333 0.24 -0.5
671,955 - GFF1333 0.24 -1.4
671,955 - GFF1333 0.24 +0.4
671,955 - GFF1333 0.24 +0.0
672,066 + GFF1333 0.30 -0.0
672,085 + GFF1333 0.31 -0.3
672,086 - GFF1333 0.31 +1.2
672,086 - GFF1333 0.31 -0.6
672,095 + GFF1333 0.31 +0.4
672,113 + GFF1333 0.32 -0.2
672,113 + GFF1333 0.32 -0.9
672,113 + GFF1333 0.32 -0.6
672,114 - GFF1333 0.32 +1.4
672,114 - GFF1333 0.32 -1.5
672,167 + GFF1333 0.35 +0.2
672,168 - GFF1333 0.35 -0.6
672,569 + GFF1333 0.57 -0.7
672,569 + GFF1333 0.57 +0.9
672,569 + GFF1333 0.57 +1.0
672,569 + GFF1333 0.57 +0.1
672,569 + GFF1333 0.57 -1.9
672,569 + GFF1333 0.57 +0.0
672,570 - GFF1333 0.57 -0.6
672,570 - GFF1333 0.57 -0.7
672,570 - GFF1333 0.57 -1.6
672,606 - GFF1333 0.59 +1.0
672,606 - GFF1333 0.59 +0.5
672,734 + GFF1333 0.66 -0.4
672,734 + GFF1333 0.66 -1.3
672,734 + GFF1333 0.66 -2.4
672,734 + GFF1333 0.66 +0.8
672,734 + GFF1333 0.66 +0.5
672,734 + GFF1333 0.66 +1.1
672,734 + GFF1333 0.66 -0.6
672,734 + GFF1333 0.66 -0.0
672,734 + GFF1333 0.66 -0.8
672,735 - GFF1333 0.66 -0.4
672,735 - GFF1333 0.66 +0.7
672,735 - GFF1333 0.66 +0.4
672,735 - GFF1333 0.66 -0.0
672,735 - GFF1333 0.66 +0.6
672,735 - GFF1333 0.66 +0.2
672,735 - GFF1333 0.66 +0.1
672,923 + GFF1333 0.76 -0.2
672,923 + GFF1333 0.76 +0.4
672,923 + GFF1333 0.76 +1.2
672,923 + GFF1333 0.76 -1.6
672,924 - GFF1333 0.76 -0.4
672,924 - GFF1333 0.76 -0.5
672,953 + GFF1333 0.78 -0.2
672,954 - GFF1333 0.78 -0.0
673,097 + GFF1333 0.86 -0.6
673,097 + GFF1333 0.86 +2.6
673,097 + GFF1333 0.86 -0.1
673,097 + GFF1333 0.86 +0.0
673,097 + GFF1333 0.86 +0.7
673,097 + GFF1333 0.86 -0.0
673,097 + GFF1333 0.86 -1.5
673,097 + GFF1333 0.86 -2.5
673,097 + GFF1333 0.86 -1.1
673,097 + GFF1333 0.86 -0.2
673,097 + GFF1333 0.86 +0.1
673,097 + GFF1333 0.86 +0.8
673,097 + GFF1333 0.86 +0.2
673,097 + GFF1333 0.86 -2.1
673,098 - GFF1333 0.86 +0.0
673,098 - GFF1333 0.86 -1.0
673,098 - GFF1333 0.86 -0.5
673,098 - GFF1333 0.86 +1.2
673,098 - GFF1333 0.86 -0.7
673,098 - GFF1333 0.86 -0.9
673,584 + +1.4
673,584 + +0.0
673,584 + +0.2
673,585 - +0.4
673,585 - -1.4
673,585 - -0.9
673,585 - +0.9
673,617 + GFF1334 0.11 -1.6
673,617 + GFF1334 0.11 +0.4
673,617 + GFF1334 0.11 -0.9
673,669 - GFF1334 0.14 +1.0
673,669 - GFF1334 0.14 +0.0
673,669 - GFF1334 0.14 -0.6
673,677 + GFF1334 0.15 +0.1
673,728 + GFF1334 0.17 -0.3
673,728 + GFF1334 0.17 -0.7
673,728 + GFF1334 0.17 +0.7
673,729 - GFF1334 0.17 -0.4
673,729 - GFF1334 0.17 -0.1
673,884 + GFF1334 0.26 +0.2
673,884 + GFF1334 0.26 -2.0
673,885 - GFF1334 0.26 +1.1
673,885 - GFF1334 0.26 +1.7
673,893 + GFF1334 0.26 -0.3
673,893 + GFF1334 0.26 -0.9
673,894 - GFF1334 0.26 +0.0
673,971 + GFF1334 0.30 +1.4
673,971 + GFF1334 0.30 -0.8
674,175 + GFF1334 0.41 +0.5
674,190 + GFF1334 0.42 -0.6
674,190 + GFF1334 0.42 -0.2
674,191 - GFF1334 0.42 -1.2
674,191 - GFF1334 0.42 +1.4
674,191 - GFF1334 0.42 -0.6
674,191 - GFF1334 0.42 -1.0
674,191 - GFF1334 0.42 +0.2
674,191 - GFF1334 0.42 -0.7
674,191 - GFF1334 0.42 -0.4
674,289 + GFF1334 0.47 +0.2
674,292 + GFF1334 0.47 -0.7
674,292 + GFF1334 0.47 +0.4
674,293 - GFF1334 0.47 +0.7
674,293 - GFF1334 0.47 -1.6
674,293 - GFF1334 0.47 -0.8

Or see this region's nucleotide sequence