Strain Fitness in Variovorax sp. SCN45 around GFF1145

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF1144 and GFF1145 are separated by 48 nucleotidesGFF1145 and GFF1146 are separated by 1 nucleotides GFF1144 - hypothetical protein, at 459,799 to 461,700 GFF1144 GFF1145 - hypothetical protein, at 461,749 to 462,117 GFF1145 GFF1146 - Pyrophosphate-energized proton pump (EC 3.6.1.1), at 462,119 to 464,635 GFF1146 Position (kb) 461 462 463Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 461.063 kb on + strand, within GFF1144at 461.063 kb on + strand, within GFF1144at 461.064 kb on - strand, within GFF1144at 461.064 kb on - strand, within GFF1144at 461.064 kb on - strand, within GFF1144at 461.064 kb on - strand, within GFF1144at 461.064 kb on - strand, within GFF1144at 461.064 kb on - strand, within GFF1144at 461.255 kb on + strand, within GFF1144at 461.255 kb on + strand, within GFF1144at 461.255 kb on + strand, within GFF1144at 461.255 kb on + strand, within GFF1144at 461.255 kb on + strand, within GFF1144at 461.255 kb on + strand, within GFF1144at 461.255 kb on + strand, within GFF1144at 461.255 kb on + strand, within GFF1144at 461.255 kb on + strand, within GFF1144at 461.256 kb on - strand, within GFF1144at 461.256 kb on - strand, within GFF1144at 461.256 kb on - strand, within GFF1144at 461.256 kb on - strand, within GFF1144at 461.256 kb on - strand, within GFF1144at 461.256 kb on - strand, within GFF1144at 461.256 kb on - strand, within GFF1144at 461.256 kb on - strand, within GFF1144at 461.256 kb on - strand, within GFF1144at 461.256 kb on - strand, within GFF1144at 461.256 kb on - strand, within GFF1144at 461.276 kb on + strand, within GFF1144at 461.276 kb on + strand, within GFF1144at 461.276 kb on + strand, within GFF1144at 461.276 kb on + strand, within GFF1144at 461.277 kb on - strand, within GFF1144at 461.277 kb on - strand, within GFF1144at 461.277 kb on - strand, within GFF1144at 461.277 kb on - strand, within GFF1144at 461.277 kb on - strand, within GFF1144at 461.483 kb on + strand, within GFF1144at 461.483 kb on + strand, within GFF1144at 461.483 kb on + strand, within GFF1144at 461.483 kb on + strand, within GFF1144at 461.483 kb on + strand, within GFF1144at 461.483 kb on + strand, within GFF1144at 461.483 kb on + strand, within GFF1144at 461.483 kb on + strand, within GFF1144at 461.483 kb on + strand, within GFF1144at 461.483 kb on + strand, within GFF1144at 461.483 kb on + strand, within GFF1144at 461.484 kb on - strand, within GFF1144at 461.484 kb on - strand, within GFF1144at 461.484 kb on - strand, within GFF1144at 461.484 kb on - strand, within GFF1144at 461.484 kb on - strand, within GFF1144at 461.484 kb on - strand, within GFF1144at 461.484 kb on - strand, within GFF1144at 461.484 kb on - strand, within GFF1144at 461.484 kb on - strand, within GFF1144at 461.484 kb on - strand, within GFF1144at 461.484 kb on - strand, within GFF1144at 461.484 kb on - strand, within GFF1144at 461.484 kb on - strand, within GFF1144at 461.484 kb on - strand, within GFF1144at 461.484 kb on - strand, within GFF1144at 461.484 kb on - strand, within GFF1144at 461.564 kb on + strandat 461.564 kb on + strandat 461.564 kb on + strandat 461.565 kb on - strandat 461.565 kb on - strandat 461.576 kb on + strandat 461.576 kb on + strandat 461.576 kb on + strandat 461.576 kb on + strandat 461.576 kb on + strandat 461.577 kb on - strandat 461.577 kb on - strandat 461.577 kb on - strandat 461.577 kb on - strandat 461.577 kb on - strandat 461.577 kb on - strandat 461.693 kb on + strandat 461.694 kb on - strandat 461.694 kb on - strandat 461.777 kb on + strandat 461.777 kb on + strandat 461.778 kb on - strandat 462.038 kb on + strand, within GFF1145at 462.038 kb on + strand, within GFF1145at 462.038 kb on + strand, within GFF1145at 462.038 kb on + strand, within GFF1145at 462.038 kb on + strand, within GFF1145at 462.038 kb on + strand, within GFF1145at 462.038 kb on + strand, within GFF1145at 462.038 kb on + strand, within GFF1145at 462.038 kb on + strand, within GFF1145at 462.039 kb on - strand, within GFF1145at 462.039 kb on - strand, within GFF1145at 462.039 kb on - strand, within GFF1145at 462.039 kb on - strand, within GFF1145at 462.039 kb on - strand, within GFF1145at 462.039 kb on - strand, within GFF1145at 462.041 kb on + strand, within GFF1145at 462.041 kb on + strand, within GFF1145at 462.041 kb on + strand, within GFF1145at 462.041 kb on + strand, within GFF1145at 462.041 kb on + strand, within GFF1145at 462.041 kb on + strand, within GFF1145at 462.041 kb on + strand, within GFF1145at 462.041 kb on + strand, within GFF1145at 462.042 kb on - strand, within GFF1145at 462.042 kb on - strand, within GFF1145at 462.042 kb on - strand, within GFF1145at 462.042 kb on - strand, within GFF1145at 462.042 kb on - strand, within GFF1145at 462.042 kb on - strand, within GFF1145at 462.128 kb on + strandat 462.128 kb on + strandat 462.129 kb on - strandat 462.129 kb on - strandat 462.129 kb on - strandat 462.129 kb on - strandat 462.408 kb on + strand, within GFF1146at 462.408 kb on + strand, within GFF1146at 462.408 kb on + strand, within GFF1146at 462.409 kb on - strand, within GFF1146at 462.669 kb on + strand, within GFF1146at 462.670 kb on - strand, within GFF1146at 462.670 kb on - strand, within GFF1146at 462.670 kb on - strand, within GFF1146at 462.670 kb on - strand, within GFF1146at 462.670 kb on - strand, within GFF1146at 462.750 kb on + strand, within GFF1146at 462.750 kb on + strand, within GFF1146at 462.750 kb on + strand, within GFF1146at 462.750 kb on + strand, within GFF1146at 462.751 kb on - strand, within GFF1146at 462.751 kb on - strand, within GFF1146at 462.751 kb on - strand, within GFF1146at 462.751 kb on - strand, within GFF1146at 462.751 kb on - strand, within GFF1146at 462.957 kb on + strand, within GFF1146at 462.957 kb on + strand, within GFF1146at 462.958 kb on - strand, within GFF1146at 463.078 kb on - strand, within GFF1146

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
remove
461,063 + GFF1144 0.66 +0.1
461,063 + GFF1144 0.66 -0.9
461,064 - GFF1144 0.67 +1.1
461,064 - GFF1144 0.67 -0.4
461,064 - GFF1144 0.67 +0.0
461,064 - GFF1144 0.67 +0.5
461,064 - GFF1144 0.67 -0.3
461,064 - GFF1144 0.67 +0.3
461,255 + GFF1144 0.77 -0.2
461,255 + GFF1144 0.77 -0.2
461,255 + GFF1144 0.77 +0.3
461,255 + GFF1144 0.77 -0.1
461,255 + GFF1144 0.77 -0.0
461,255 + GFF1144 0.77 +0.0
461,255 + GFF1144 0.77 -0.6
461,255 + GFF1144 0.77 +1.2
461,255 + GFF1144 0.77 +0.1
461,256 - GFF1144 0.77 -2.9
461,256 - GFF1144 0.77 -1.1
461,256 - GFF1144 0.77 -0.1
461,256 - GFF1144 0.77 +0.9
461,256 - GFF1144 0.77 +0.4
461,256 - GFF1144 0.77 -0.5
461,256 - GFF1144 0.77 +0.3
461,256 - GFF1144 0.77 -0.1
461,256 - GFF1144 0.77 -0.6
461,256 - GFF1144 0.77 -1.2
461,256 - GFF1144 0.77 -0.3
461,276 + GFF1144 0.78 -0.9
461,276 + GFF1144 0.78 -0.1
461,276 + GFF1144 0.78 -0.9
461,276 + GFF1144 0.78 +0.3
461,277 - GFF1144 0.78 +0.0
461,277 - GFF1144 0.78 -1.1
461,277 - GFF1144 0.78 -1.2
461,277 - GFF1144 0.78 -0.2
461,277 - GFF1144 0.78 -0.4
461,483 + GFF1144 0.89 +1.1
461,483 + GFF1144 0.89 +0.0
461,483 + GFF1144 0.89 +0.6
461,483 + GFF1144 0.89 +0.0
461,483 + GFF1144 0.89 -0.9
461,483 + GFF1144 0.89 -0.8
461,483 + GFF1144 0.89 -0.2
461,483 + GFF1144 0.89 -0.6
461,483 + GFF1144 0.89 -0.3
461,483 + GFF1144 0.89 +0.4
461,483 + GFF1144 0.89 +0.3
461,484 - GFF1144 0.89 +0.7
461,484 - GFF1144 0.89 +0.1
461,484 - GFF1144 0.89 -1.1
461,484 - GFF1144 0.89 +0.4
461,484 - GFF1144 0.89 -0.5
461,484 - GFF1144 0.89 -2.5
461,484 - GFF1144 0.89 -0.7
461,484 - GFF1144 0.89 +0.7
461,484 - GFF1144 0.89 +0.5
461,484 - GFF1144 0.89 -0.5
461,484 - GFF1144 0.89 +0.5
461,484 - GFF1144 0.89 -1.6
461,484 - GFF1144 0.89 -0.7
461,484 - GFF1144 0.89 -0.0
461,484 - GFF1144 0.89 -1.7
461,484 - GFF1144 0.89 -1.1
461,564 + -0.5
461,564 + -1.3
461,564 + -2.4
461,565 - -0.7
461,565 - +0.6
461,576 + +1.0
461,576 + -2.4
461,576 + -0.9
461,576 + -0.6
461,576 + +0.2
461,577 - +0.6
461,577 - -0.4
461,577 - -0.2
461,577 - +0.7
461,577 - -1.4
461,577 - +0.4
461,693 + -0.9
461,694 - -0.1
461,694 - +0.9
461,777 + -1.1
461,777 + +0.1
461,778 - +0.1
462,038 + GFF1145 0.78 -0.3
462,038 + GFF1145 0.78 -0.4
462,038 + GFF1145 0.78 -0.6
462,038 + GFF1145 0.78 +1.4
462,038 + GFF1145 0.78 +0.3
462,038 + GFF1145 0.78 -2.3
462,038 + GFF1145 0.78 -1.9
462,038 + GFF1145 0.78 -0.1
462,038 + GFF1145 0.78 -1.4
462,039 - GFF1145 0.79 +0.0
462,039 - GFF1145 0.79 -0.8
462,039 - GFF1145 0.79 -1.5
462,039 - GFF1145 0.79 -0.6
462,039 - GFF1145 0.79 -0.9
462,039 - GFF1145 0.79 -0.7
462,041 + GFF1145 0.79 -0.8
462,041 + GFF1145 0.79 +1.4
462,041 + GFF1145 0.79 +0.1
462,041 + GFF1145 0.79 +0.9
462,041 + GFF1145 0.79 +1.4
462,041 + GFF1145 0.79 -0.7
462,041 + GFF1145 0.79 -0.5
462,041 + GFF1145 0.79 +0.3
462,042 - GFF1145 0.79 -0.6
462,042 - GFF1145 0.79 -0.2
462,042 - GFF1145 0.79 -0.9
462,042 - GFF1145 0.79 -1.9
462,042 - GFF1145 0.79 +0.1
462,042 - GFF1145 0.79 -0.5
462,128 + -0.6
462,128 + +0.3
462,129 - +1.0
462,129 - -0.1
462,129 - -1.1
462,129 - -2.0
462,408 + GFF1146 0.11 +1.0
462,408 + GFF1146 0.11 +0.5
462,408 + GFF1146 0.11 +1.0
462,409 - GFF1146 0.12 -0.5
462,669 + GFF1146 0.22 -1.0
462,670 - GFF1146 0.22 +0.4
462,670 - GFF1146 0.22 +0.1
462,670 - GFF1146 0.22 +0.6
462,670 - GFF1146 0.22 +0.3
462,670 - GFF1146 0.22 +0.8
462,750 + GFF1146 0.25 +0.0
462,750 + GFF1146 0.25 +0.8
462,750 + GFF1146 0.25 -0.1
462,750 + GFF1146 0.25 +0.7
462,751 - GFF1146 0.25 +0.0
462,751 - GFF1146 0.25 -0.8
462,751 - GFF1146 0.25 +1.1
462,751 - GFF1146 0.25 +0.6
462,751 - GFF1146 0.25 -0.1
462,957 + GFF1146 0.33 -0.2
462,957 + GFF1146 0.33 +2.4
462,958 - GFF1146 0.33 +1.0
463,078 - GFF1146 0.38 +0.3

Or see this region's nucleotide sequence