Strain Fitness in Escherichia coli ECRC62 around BNILDI_22365

Experiment: JK36

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntylbG and BNILDI_22365 are separated by 514 nucleotidesBNILDI_22365 and rhsA overlap by 20 nucleotides BNILDI_22360: ylbG - Uncharacterized protein YlbG, at 4,494,185 to 4,494,556 ylbG BNILDI_22365: BNILDI_22365 - Protein, at 4,495,071 to 4,495,562 _22365 BNILDI_22370: rhsA - Uncharacterized conserved protein RhaS, contains 28 RHS repeats, at 4,495,543 to 4,499,754 rhsA Position (kb) 4495 4496Strain fitness (log2 ratio) -2 -1 0 1at 4494.079 kb on + strandat 4494.079 kb on + strandat 4494.079 kb on + strandat 4494.079 kb on + strandat 4494.079 kb on + strandat 4494.080 kb on - strandat 4494.080 kb on - strandat 4494.089 kb on - strandat 4494.145 kb on - strandat 4494.178 kb on - strandat 4494.370 kb on + strand, within ylbGat 4494.376 kb on + strand, within ylbGat 4494.592 kb on + strandat 4494.593 kb on - strandat 4494.942 kb on + strandat 4495.072 kb on + strandat 4495.277 kb on + strand, within BNILDI_22365at 4495.278 kb on - strand, within BNILDI_22365at 4495.348 kb on - strand, within BNILDI_22365at 4495.442 kb on + strand, within BNILDI_22365at 4495.567 kb on + strandat 4495.839 kb on + strandat 4495.906 kb on + strandat 4495.906 kb on + strandat 4495.931 kb on - strandat 4495.949 kb on - strandat 4495.957 kb on + strandat 4495.957 kb on + strandat 4495.958 kb on - strandat 4496.018 kb on + strand, within rhsAat 4496.018 kb on + strand, within rhsAat 4496.018 kb on + strand, within rhsAat 4496.062 kb on - strand, within rhsAat 4496.063 kb on + strand, within rhsAat 4496.088 kb on - strand, within rhsAat 4496.106 kb on - strand, within rhsA

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Per-strain Table

Position Strand Gene LocusTag Fraction JK36
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4,494,079 + -1.0
4,494,079 + +0.6
4,494,079 + +1.0
4,494,079 + -0.3
4,494,079 + -0.5
4,494,080 - -2.2
4,494,080 - +0.2
4,494,089 - +1.7
4,494,145 - -0.9
4,494,178 - -0.0
4,494,370 + ylbG BNILDI_22360 0.50 +0.6
4,494,376 + ylbG BNILDI_22360 0.51 -1.3
4,494,592 + -0.3
4,494,593 - +0.4
4,494,942 + +0.4
4,495,072 + +0.8
4,495,277 + BNILDI_22365 0.42 -1.5
4,495,278 - BNILDI_22365 0.42 -0.4
4,495,348 - BNILDI_22365 0.56 -0.2
4,495,442 + BNILDI_22365 0.75 -1.2
4,495,567 + -1.1
4,495,839 + +0.2
4,495,906 + +1.4
4,495,906 + +1.7
4,495,931 - +1.2
4,495,949 - -0.5
4,495,957 + +1.3
4,495,957 + +0.5
4,495,958 - -0.3
4,496,018 + rhsA BNILDI_22370 0.11 +0.0
4,496,018 + rhsA BNILDI_22370 0.11 -0.2
4,496,018 + rhsA BNILDI_22370 0.11 -0.1
4,496,062 - rhsA BNILDI_22370 0.12 +1.2
4,496,063 + rhsA BNILDI_22370 0.12 +0.2
4,496,088 - rhsA BNILDI_22370 0.13 -1.2
4,496,106 - rhsA BNILDI_22370 0.13 +0.8

Or see this region's nucleotide sequence