Experiment: JK36
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt citF and citX are separated by 3 nucleotides citX and citG overlap by 26 nucleotides citG and citT are separated by 50 nucleotides
BNILDI_21845: citF - citrate lyase subunit alpha, at 4,390,334 to 4,391,866
citF
BNILDI_21850: citX - Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase, at 4,391,870 to 4,392,421
citX
BNILDI_21855: citG - triphosphoribosyl-dephospho-CoA synthase CitG, at 4,392,396 to 4,393,274
citG
BNILDI_21860: citT - citrate/succinate antiporter CitT, at 4,393,325 to 4,394,788
citT
Position (kb) 4391
4392
4393 Strain fitness (log2 ratio) -1
0
1
2 at 4391.008 kb on - strand, within citF at 4391.133 kb on - strand, within citF at 4391.252 kb on - strand, within citF at 4391.310 kb on + strand, within citF at 4391.310 kb on + strand, within citF at 4391.311 kb on - strand, within citF at 4391.390 kb on - strand, within citF at 4391.500 kb on - strand, within citF at 4391.584 kb on + strand, within citF at 4391.585 kb on - strand, within citF at 4391.865 kb on - strand at 4392.209 kb on - strand, within citX at 4392.209 kb on - strand, within citX at 4392.209 kb on - strand, within citX at 4392.209 kb on - strand, within citX at 4392.366 kb on + strand at 4392.366 kb on + strand at 4392.419 kb on + strand at 4392.551 kb on + strand, within citG at 4392.629 kb on + strand, within citG at 4392.656 kb on - strand, within citG at 4392.681 kb on - strand, within citG at 4392.698 kb on + strand, within citG at 4392.699 kb on - strand, within citG at 4392.732 kb on - strand, within citG at 4392.732 kb on - strand, within citG at 4392.752 kb on - strand, within citG at 4392.825 kb on - strand, within citG at 4392.906 kb on + strand, within citG at 4392.987 kb on + strand, within citG at 4392.988 kb on - strand, within citG at 4393.037 kb on + strand, within citG at 4393.136 kb on - strand, within citG at 4393.136 kb on - strand, within citG at 4393.342 kb on + strand at 4393.343 kb on - strand at 4393.345 kb on + strand at 4393.346 kb on - strand at 4393.357 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction JK36 remove 4,391,008 - citF BNILDI_21845 0.44 -0.7 4,391,133 - citF BNILDI_21845 0.52 +0.3 4,391,252 - citF BNILDI_21845 0.60 -0.7 4,391,310 + citF BNILDI_21845 0.64 -0.7 4,391,310 + citF BNILDI_21845 0.64 +0.8 4,391,311 - citF BNILDI_21845 0.64 -0.1 4,391,390 - citF BNILDI_21845 0.69 -1.1 4,391,500 - citF BNILDI_21845 0.76 +2.4 4,391,584 + citF BNILDI_21845 0.82 +0.1 4,391,585 - citF BNILDI_21845 0.82 +0.2 4,391,865 - -0.4 4,392,209 - citX BNILDI_21850 0.61 -0.5 4,392,209 - citX BNILDI_21850 0.61 -1.2 4,392,209 - citX BNILDI_21850 0.61 -0.6 4,392,209 - citX BNILDI_21850 0.61 -0.3 4,392,366 + +0.8 4,392,366 + -0.6 4,392,419 + +0.3 4,392,551 + citG BNILDI_21855 0.18 -0.0 4,392,629 + citG BNILDI_21855 0.27 +0.4 4,392,656 - citG BNILDI_21855 0.30 -0.7 4,392,681 - citG BNILDI_21855 0.32 -0.0 4,392,698 + citG BNILDI_21855 0.34 -0.4 4,392,699 - citG BNILDI_21855 0.34 -0.3 4,392,732 - citG BNILDI_21855 0.38 +0.3 4,392,732 - citG BNILDI_21855 0.38 -0.6 4,392,752 - citG BNILDI_21855 0.41 +0.1 4,392,825 - citG BNILDI_21855 0.49 +0.0 4,392,906 + citG BNILDI_21855 0.58 -0.3 4,392,987 + citG BNILDI_21855 0.67 -0.4 4,392,988 - citG BNILDI_21855 0.67 -1.4 4,393,037 + citG BNILDI_21855 0.73 +0.8 4,393,136 - citG BNILDI_21855 0.84 -0.1 4,393,136 - citG BNILDI_21855 0.84 -0.4 4,393,342 + -0.8 4,393,343 - -0.5 4,393,345 + +0.7 4,393,346 - -1.5 4,393,357 - +0.1
Or see this region's nucleotide sequence