Experiment: JK36
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yddE and BNILDI_17595 are separated by 95 nucleotides BNILDI_17595 and BNILDI_17600 are separated by 35 nucleotides
BNILDI_17590: yddE - PhzF family isomerase, at 3,542,770 to 3,543,663
yddE
BNILDI_17595: BNILDI_17595 - N-hydroxyarylamine O-acetyltransferase, at 3,543,759 to 3,544,382
_17595
BNILDI_17600: BNILDI_17600 - type VI secretion system Vgr family protein, at 3,544,418 to 3,545,167
_17600
Position (kb) 3543
3544
3545 Strain fitness (log2 ratio) -2
-1
0
1
2 at 3542.786 kb on - strand at 3542.802 kb on + strand at 3542.958 kb on + strand, within yddE at 3542.999 kb on + strand, within yddE at 3543.010 kb on + strand, within yddE at 3543.010 kb on + strand, within yddE at 3543.011 kb on - strand, within yddE at 3543.011 kb on - strand, within yddE at 3543.014 kb on + strand, within yddE at 3543.015 kb on - strand, within yddE at 3543.015 kb on - strand, within yddE at 3543.015 kb on - strand, within yddE at 3543.114 kb on + strand, within yddE at 3543.115 kb on - strand, within yddE at 3543.402 kb on + strand, within yddE at 3543.403 kb on - strand, within yddE at 3543.403 kb on - strand, within yddE at 3543.403 kb on - strand, within yddE at 3543.479 kb on + strand, within yddE at 3543.479 kb on + strand, within yddE at 3543.492 kb on - strand, within yddE at 3543.515 kb on + strand, within yddE at 3543.515 kb on + strand, within yddE at 3543.515 kb on + strand, within yddE at 3543.515 kb on + strand, within yddE at 3543.516 kb on - strand, within yddE at 3543.708 kb on + strand at 3543.708 kb on + strand at 3543.708 kb on + strand at 3543.731 kb on + strand at 3543.755 kb on + strand at 3543.877 kb on + strand, within BNILDI_17595 at 3543.877 kb on + strand, within BNILDI_17595 at 3543.877 kb on + strand, within BNILDI_17595 at 3543.878 kb on - strand, within BNILDI_17595 at 3543.878 kb on - strand, within BNILDI_17595 at 3543.878 kb on - strand, within BNILDI_17595 at 3543.878 kb on - strand, within BNILDI_17595 at 3543.879 kb on + strand, within BNILDI_17595 at 3543.880 kb on - strand, within BNILDI_17595 at 3544.090 kb on + strand, within BNILDI_17595 at 3544.324 kb on - strand at 3544.324 kb on - strand at 3544.333 kb on - strand at 3544.366 kb on - strand at 3544.420 kb on - strand at 3545.167 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction JK36 remove 3,542,786 - +0.3 3,542,802 + -0.8 3,542,958 + yddE BNILDI_17590 0.21 -0.9 3,542,999 + yddE BNILDI_17590 0.26 +0.6 3,543,010 + yddE BNILDI_17590 0.27 -0.4 3,543,010 + yddE BNILDI_17590 0.27 +0.7 3,543,011 - yddE BNILDI_17590 0.27 -0.9 3,543,011 - yddE BNILDI_17590 0.27 -0.3 3,543,014 + yddE BNILDI_17590 0.27 +0.0 3,543,015 - yddE BNILDI_17590 0.27 +1.9 3,543,015 - yddE BNILDI_17590 0.27 +0.6 3,543,015 - yddE BNILDI_17590 0.27 -0.2 3,543,114 + yddE BNILDI_17590 0.38 -0.8 3,543,115 - yddE BNILDI_17590 0.39 -0.2 3,543,402 + yddE BNILDI_17590 0.71 -0.1 3,543,403 - yddE BNILDI_17590 0.71 +2.1 3,543,403 - yddE BNILDI_17590 0.71 -0.8 3,543,403 - yddE BNILDI_17590 0.71 -0.6 3,543,479 + yddE BNILDI_17590 0.79 -0.2 3,543,479 + yddE BNILDI_17590 0.79 +0.6 3,543,492 - yddE BNILDI_17590 0.81 -0.3 3,543,515 + yddE BNILDI_17590 0.83 +0.6 3,543,515 + yddE BNILDI_17590 0.83 +0.7 3,543,515 + yddE BNILDI_17590 0.83 -1.6 3,543,515 + yddE BNILDI_17590 0.83 +0.7 3,543,516 - yddE BNILDI_17590 0.83 +1.0 3,543,708 + +1.1 3,543,708 + +2.6 3,543,708 + -0.2 3,543,731 + +1.6 3,543,755 + -0.6 3,543,877 + BNILDI_17595 0.19 +0.1 3,543,877 + BNILDI_17595 0.19 +0.3 3,543,877 + BNILDI_17595 0.19 +0.2 3,543,878 - BNILDI_17595 0.19 -0.3 3,543,878 - BNILDI_17595 0.19 +0.9 3,543,878 - BNILDI_17595 0.19 -0.9 3,543,878 - BNILDI_17595 0.19 -0.4 3,543,879 + BNILDI_17595 0.19 -2.5 3,543,880 - BNILDI_17595 0.19 -1.3 3,544,090 + BNILDI_17595 0.53 +0.1 3,544,324 - +1.3 3,544,324 - -0.0 3,544,333 - -0.6 3,544,366 - +0.1 3,544,420 - +0.6 3,545,167 + +0.4
Or see this region's nucleotide sequence