Strain Fitness in Escherichia coli ECRC62 around BNILDI_17445

Experiment: JK36

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	JK36
3,508,812	+				-0.1
3,509,131	+				-0.5
3,509,145	-				+2.3
3,509,211	+	ddpX	BNILDI_17440	0.11	-0.1
3,509,212	-	ddpX	BNILDI_17440	0.12	+0.1
3,509,238	-	ddpX	BNILDI_17440	0.16	+0.0
3,509,243	+	ddpX	BNILDI_17440	0.17	-0.3
3,509,244	-	ddpX	BNILDI_17440	0.17	+1.1
3,509,248	-	ddpX	BNILDI_17440	0.18	-0.8
3,509,304	-	ddpX	BNILDI_17440	0.27	-0.4
3,509,329	+	ddpX	BNILDI_17440	0.32	+0.6
3,509,406	+	ddpX	BNILDI_17440	0.45	-0.7
3,509,407	-	ddpX	BNILDI_17440	0.45	-0.8
3,509,407	-	ddpX	BNILDI_17440	0.45	+2.0
3,509,407	-	ddpX	BNILDI_17440	0.45	+3.8
3,509,648	-	ddpX	BNILDI_17440	0.86	+2.0
3,509,696	+				+0.1
3,509,696	+				-0.5
3,509,696	+				+1.3
3,509,696	+				-0.1
3,509,696	+				-0.8
3,509,696	+				+0.0
3,509,697	-				-1.7
3,509,697	-				+0.7
3,509,697	-				+0.3
3,509,697	-				+0.1
3,509,699	-				+1.5
3,509,724	+				+0.3
3,509,829	+				+0.9
3,509,830	-				-0.7
3,509,830	-				+2.1
3,509,830	-				-0.6
3,509,886	-				+2.0
3,509,886	-				+1.4
3,509,886	-				-0.6
3,509,889	+				-0.8
3,509,889	+				-0.5
3,510,049	-	ddpA	BNILDI_17445	0.20	+0.5
3,510,110	+	ddpA	BNILDI_17445	0.24	-0.8
3,510,177	+	ddpA	BNILDI_17445	0.28	-0.1
3,510,177	+	ddpA	BNILDI_17445	0.28	-1.9
3,510,221	-	ddpA	BNILDI_17445	0.31	-0.5
3,510,333	+	ddpA	BNILDI_17445	0.38	-0.2
3,510,334	-	ddpA	BNILDI_17445	0.38	-0.1
3,510,334	-	ddpA	BNILDI_17445	0.38	-1.7
3,510,535	-	ddpA	BNILDI_17445	0.51	+0.5
3,510,553	+	ddpA	BNILDI_17445	0.52	-0.9
3,510,574	+	ddpA	BNILDI_17445	0.54	-0.4
3,510,574	+	ddpA	BNILDI_17445	0.54	+0.5
3,510,574	+	ddpA	BNILDI_17445	0.54	-0.3
3,510,574	+	ddpA	BNILDI_17445	0.54	+0.3
3,510,575	-	ddpA	BNILDI_17445	0.54	-0.5
3,510,575	-	ddpA	BNILDI_17445	0.54	-0.8
3,510,575	-	ddpA	BNILDI_17445	0.54	-0.3
3,510,581	-	ddpA	BNILDI_17445	0.54	+0.9
3,510,606	+	ddpA	BNILDI_17445	0.56	+0.8
3,510,748	+	ddpA	BNILDI_17445	0.65	-0.0
3,511,000	+	ddpA	BNILDI_17445	0.81	-0.1
3,511,001	-	ddpA	BNILDI_17445	0.81	-0.2
3,511,002	+	ddpA	BNILDI_17445	0.81	+0.2
3,511,009	-	ddpA	BNILDI_17445	0.82	-0.7
3,511,015	+	ddpA	BNILDI_17445	0.82	-0.1
3,511,064	-	ddpA	BNILDI_17445	0.85	-0.5
3,511,177	+				-0.8
3,511,177	+				-1.2
3,511,177	+				-1.3
3,511,177	+				+0.9
3,511,177	+				-0.8
3,511,177	+				+0.6
3,511,178	-				-0.2
3,511,178	-				-0.6
3,511,178	-				-0.3
3,511,183	+				-0.5
3,511,183	+				+1.5
3,511,284	+				-0.1
3,511,284	+				-0.4
3,511,285	-				+0.9
3,511,373	-				-0.7
3,511,448	-	ddpB	BNILDI_17450	0.15	+0.5
3,511,481	+	ddpB	BNILDI_17450	0.18	-0.5
3,511,481	+	ddpB	BNILDI_17450	0.18	+0.5
3,511,481	+	ddpB	BNILDI_17450	0.18	-0.3
3,511,482	-	ddpB	BNILDI_17450	0.19	-1.1
3,511,485	+	ddpB	BNILDI_17450	0.19	-0.5
3,511,486	-	ddpB	BNILDI_17450	0.19	-0.8
3,511,573	+	ddpB	BNILDI_17450	0.27	-0.1
3,511,573	+	ddpB	BNILDI_17450	0.27	-0.1
3,511,574	-	ddpB	BNILDI_17450	0.28	+0.7
3,511,650	+	ddpB	BNILDI_17450	0.35	-1.1
3,511,651	-	ddpB	BNILDI_17450	0.35	+0.8
3,511,698	+	ddpB	BNILDI_17450	0.40	+0.3
3,511,764	-	ddpB	BNILDI_17450	0.46	+0.4
3,511,995	-	ddpB	BNILDI_17450	0.69	-0.5
3,511,995	-	ddpB	BNILDI_17450	0.69	-0.8
3,512,034	-	ddpB	BNILDI_17450	0.73	+0.2
3,512,043	+	ddpB	BNILDI_17450	0.73	-0.2
3,512,044	-	ddpB	BNILDI_17450	0.74	+0.9
3,512,044	-	ddpB	BNILDI_17450	0.74	+0.5
3,512,169	+	ddpB	BNILDI_17450	0.86	+0.5
3,512,172	+	ddpB	BNILDI_17450	0.86	+0.2
3,512,173	-	ddpB	BNILDI_17450	0.86	-0.7
3,512,173	-	ddpB	BNILDI_17450	0.86	+0.1
3,512,181	+	ddpB	BNILDI_17450	0.87	-1.3
3,512,181	+	ddpB	BNILDI_17450	0.87	+0.8
3,512,237	+				-0.3
3,512,237	+				-0.1
3,512,237	+				-0.8
3,512,238	-				-0.4
3,512,238	-				-0.7
3,512,270	+				-0.1
3,512,270	+				-0.6
3,512,270	+				-0.2
3,512,271	-				+0.2