Experiment: JK36
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt pgsA and Gly_trna are separated by 151 nucleotides Gly_trna and Cys_trna are separated by 54 nucleotides Cys_trna and Leu_trna are separated by 12 nucleotides Leu_trna and yecA are separated by 195 nucleotides yecA and tyrP are separated by 61 nucleotides
BNILDI_15240: pgsA - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, at 3,069,824 to 3,070,372
pgsA
BNILDI_15245: Gly_trna - tRNA-Gly(gcc), at 3,070,524 to 3,070,599
_trna
BNILDI_15250: Cys_trna - tRNA-Cys(gca), at 3,070,654 to 3,070,727
_trna
BNILDI_15255: Leu_trna - tRNA-Leu(taa), at 3,070,740 to 3,070,826
_trna
BNILDI_15260: yecA - UPF0149 family protein YecA, at 3,071,022 to 3,071,687
yecA
BNILDI_15265: tyrP - tyrosine transporter TyrP, at 3,071,749 to 3,072,960
tyrP
Position (kb)
3071
3072 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3070.980 kb on + strand at 3070.981 kb on - strand at 3070.981 kb on - strand at 3070.981 kb on - strand at 3070.981 kb on - strand at 3070.981 kb on - strand at 3070.986 kb on - strand at 3071.021 kb on + strand at 3071.205 kb on + strand, within yecA at 3071.205 kb on + strand, within yecA at 3071.206 kb on - strand, within yecA at 3071.267 kb on + strand, within yecA at 3071.268 kb on - strand, within yecA at 3071.382 kb on + strand, within yecA at 3071.382 kb on + strand, within yecA at 3071.382 kb on + strand, within yecA at 3071.385 kb on - strand, within yecA at 3071.524 kb on + strand, within yecA at 3071.524 kb on + strand, within yecA at 3071.524 kb on + strand, within yecA at 3071.525 kb on - strand, within yecA at 3071.743 kb on - strand at 3072.079 kb on + strand, within tyrP at 3072.131 kb on - strand, within tyrP at 3072.197 kb on - strand, within tyrP at 3072.274 kb on - strand, within tyrP at 3072.320 kb on - strand, within tyrP at 3072.343 kb on - strand, within tyrP at 3072.344 kb on + strand, within tyrP at 3072.344 kb on + strand, within tyrP at 3072.345 kb on - strand, within tyrP at 3072.345 kb on - strand, within tyrP at 3072.345 kb on - strand, within tyrP at 3072.388 kb on - strand, within tyrP at 3072.460 kb on - strand, within tyrP at 3072.616 kb on - strand, within tyrP at 3072.669 kb on - strand, within tyrP
Per-strain Table
Position Strand Gene LocusTag Fraction JK36 remove 3,070,980 + -1.0 3,070,981 - +0.5 3,070,981 - -0.0 3,070,981 - -1.1 3,070,981 - -0.7 3,070,981 - +0.1 3,070,986 - -1.7 3,071,021 + -0.8 3,071,205 + yecA BNILDI_15260 0.27 -2.1 3,071,205 + yecA BNILDI_15260 0.27 -0.0 3,071,206 - yecA BNILDI_15260 0.28 -1.3 3,071,267 + yecA BNILDI_15260 0.37 -0.1 3,071,268 - yecA BNILDI_15260 0.37 -1.1 3,071,382 + yecA BNILDI_15260 0.54 +0.3 3,071,382 + yecA BNILDI_15260 0.54 -1.8 3,071,382 + yecA BNILDI_15260 0.54 +1.9 3,071,385 - yecA BNILDI_15260 0.55 +0.7 3,071,524 + yecA BNILDI_15260 0.75 +0.7 3,071,524 + yecA BNILDI_15260 0.75 +1.3 3,071,524 + yecA BNILDI_15260 0.75 +0.1 3,071,525 - yecA BNILDI_15260 0.76 -0.2 3,071,743 - -0.0 3,072,079 + tyrP BNILDI_15265 0.27 -1.2 3,072,131 - tyrP BNILDI_15265 0.32 +0.1 3,072,197 - tyrP BNILDI_15265 0.37 -2.2 3,072,274 - tyrP BNILDI_15265 0.43 +0.1 3,072,320 - tyrP BNILDI_15265 0.47 +1.1 3,072,343 - tyrP BNILDI_15265 0.49 +0.7 3,072,344 + tyrP BNILDI_15265 0.49 -0.2 3,072,344 + tyrP BNILDI_15265 0.49 +0.5 3,072,345 - tyrP BNILDI_15265 0.49 +0.8 3,072,345 - tyrP BNILDI_15265 0.49 +1.1 3,072,345 - tyrP BNILDI_15265 0.49 -0.1 3,072,388 - tyrP BNILDI_15265 0.53 -0.7 3,072,460 - tyrP BNILDI_15265 0.59 -0.1 3,072,616 - tyrP BNILDI_15265 0.72 -0.5 3,072,669 - tyrP BNILDI_15265 0.76 -0.9
Or see this region's nucleotide sequence