Strain Fitness in Escherichia coli ECRC62 around BNILDI_13835

Experiment: JK36

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntyejM and yejL are separated by 19 nucleotidesyejL and yejK are separated by 181 nucleotides BNILDI_13830: yejM - LPS biosynthesis-modulating metalloenzyme YejM, at 2,781,206 to 2,782,966 yejM BNILDI_13835: yejL - UPF0352 protein YejL, at 2,782,986 to 2,783,213 yejL BNILDI_13840: yejK - nucleoid-associated protein YejK, at 2,783,395 to 2,784,402 yejK Position (kb) 2782 2783 2784Strain fitness (log2 ratio) -2 -1 0 1 2at 2782.015 kb on + strand, within yejMat 2782.018 kb on - strand, within yejMat 2782.018 kb on - strand, within yejMat 2782.018 kb on - strand, within yejMat 2782.018 kb on - strand, within yejMat 2782.018 kb on - strand, within yejMat 2782.018 kb on - strand, within yejMat 2782.035 kb on + strand, within yejMat 2782.081 kb on + strand, within yejMat 2782.172 kb on - strand, within yejMat 2782.255 kb on + strand, within yejMat 2782.281 kb on + strand, within yejMat 2782.281 kb on + strand, within yejMat 2782.282 kb on - strand, within yejMat 2782.402 kb on + strand, within yejMat 2783.249 kb on - strandat 2783.249 kb on - strandat 2783.257 kb on - strandat 2783.391 kb on + strandat 2783.554 kb on + strand, within yejKat 2783.565 kb on + strand, within yejKat 2783.677 kb on + strand, within yejKat 2783.738 kb on - strand, within yejKat 2783.772 kb on + strand, within yejKat 2784.040 kb on - strand, within yejKat 2784.073 kb on + strand, within yejKat 2784.075 kb on + strand, within yejKat 2784.075 kb on + strand, within yejKat 2784.075 kb on + strand, within yejKat 2784.076 kb on - strand, within yejKat 2784.079 kb on + strand, within yejKat 2784.084 kb on + strand, within yejK

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction JK36
remove
2,782,015 + yejM BNILDI_13830 0.46 -0.9
2,782,018 - yejM BNILDI_13830 0.46 -1.8
2,782,018 - yejM BNILDI_13830 0.46 -1.4
2,782,018 - yejM BNILDI_13830 0.46 +0.6
2,782,018 - yejM BNILDI_13830 0.46 -0.1
2,782,018 - yejM BNILDI_13830 0.46 +1.2
2,782,018 - yejM BNILDI_13830 0.46 -1.1
2,782,035 + yejM BNILDI_13830 0.47 +0.6
2,782,081 + yejM BNILDI_13830 0.50 -0.9
2,782,172 - yejM BNILDI_13830 0.55 -1.4
2,782,255 + yejM BNILDI_13830 0.60 -0.2
2,782,281 + yejM BNILDI_13830 0.61 +1.6
2,782,281 + yejM BNILDI_13830 0.61 -1.4
2,782,282 - yejM BNILDI_13830 0.61 +0.1
2,782,402 + yejM BNILDI_13830 0.68 -0.7
2,783,249 - -0.8
2,783,249 - +1.6
2,783,257 - -0.4
2,783,391 + -0.1
2,783,554 + yejK BNILDI_13840 0.16 +0.8
2,783,565 + yejK BNILDI_13840 0.17 -0.1
2,783,677 + yejK BNILDI_13840 0.28 -0.4
2,783,738 - yejK BNILDI_13840 0.34 +0.5
2,783,772 + yejK BNILDI_13840 0.37 +0.8
2,784,040 - yejK BNILDI_13840 0.64 -0.7
2,784,073 + yejK BNILDI_13840 0.67 -0.6
2,784,075 + yejK BNILDI_13840 0.67 +0.6
2,784,075 + yejK BNILDI_13840 0.67 -0.8
2,784,075 + yejK BNILDI_13840 0.67 +0.1
2,784,076 - yejK BNILDI_13840 0.68 +0.1
2,784,079 + yejK BNILDI_13840 0.68 -1.8
2,784,084 + yejK BNILDI_13840 0.68 +2.3

Or see this region's nucleotide sequence