Strain Fitness in Escherichia coli ECRC62 around BNILDI_11280

Experiment: JK36

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	JK36
2,270,008	-	ygaP	BNILDI_11265	0.66	+2.4
2,270,207	+				-0.9
2,270,207	+				-0.4
2,270,263	+	ygaV	BNILDI_11270	0.22	-0.6
2,270,264	-	ygaV	BNILDI_11270	0.22	+0.2
2,270,425	-	ygaV	BNILDI_11270	0.76	-1.4
2,270,447	-	ygaV	BNILDI_11270	0.83	-0.4
2,270,477	-				-0.4
2,270,477	-				+0.7
2,270,531	+				-0.2
2,270,549	+				-0.1
2,270,550	-				-0.0
2,270,552	-				+0.1
2,270,765	+	yqaE	BNILDI_11275	0.54	+0.7
2,270,766	-	yqaE	BNILDI_11275	0.55	-1.8
2,270,766	-	yqaE	BNILDI_11275	0.55	+0.6
2,270,768	+	yqaE	BNILDI_11275	0.56	+1.4
2,270,769	-	yqaE	BNILDI_11275	0.57	-1.4
2,270,791	-	yqaE	BNILDI_11275	0.70	-0.8
2,270,921	-				-0.7
2,270,921	-				+0.7
2,271,275	-	kbp	BNILDI_11280	0.79	-0.5
2,271,282	-	kbp	BNILDI_11280	0.80	-0.3
2,271,355	+				+0.2
2,271,368	+				-0.5
2,271,368	+				-1.4
2,271,373	-				+1.7
2,271,417	-				-0.3
2,271,431	+				-0.2
2,271,432	-				-0.1
2,271,499	+	csiR	BNILDI_11285	0.19	-0.3
2,271,545	-	csiR	BNILDI_11285	0.26	+0.2
2,271,545	-	csiR	BNILDI_11285	0.26	+0.9
2,271,597	+	csiR	BNILDI_11285	0.34	+2.4
2,271,598	-	csiR	BNILDI_11285	0.34	-1.8
2,271,629	-	csiR	BNILDI_11285	0.39	-0.9
2,271,629	-	csiR	BNILDI_11285	0.39	-0.6
2,271,829	+	csiR	BNILDI_11285	0.69	-0.6
2,271,830	-	csiR	BNILDI_11285	0.69	+0.5
2,272,025	-				-2.3
2,272,025	-				+0.5
2,272,063	-				+0.7
2,272,063	-				-1.1
2,272,065	+				+0.7
2,272,065	+				+1.2
2,272,131	+				+0.4
2,272,131	+				-0.8
2,272,147	+				-0.1
2,272,169	-				-0.1
2,272,199	-	gabP	BNILDI_11290	0.10	-1.7
2,272,216	-	gabP	BNILDI_11290	0.12	-1.8
2,272,216	-	gabP	BNILDI_11290	0.12	-3.6
2,272,247	+	gabP	BNILDI_11290	0.14	-0.6
2,272,248	-	gabP	BNILDI_11290	0.14	-0.2
2,272,327	+	gabP	BNILDI_11290	0.19	-0.4