Strain Fitness in Escherichia coli ECRC62 around BNILDI_10645

Experiment: JK36

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntrelA and mazE are separated by 77 nucleotidesmazE and mazF overlap by 1 nucleotidesmazF and mazG are separated by 70 nucleotidesmazG and pyrG are separated by 227 nucleotides BNILDI_10630: relA - GTP diphosphokinase, at 2,147,943 to 2,150,177 relA BNILDI_10635: mazE - type II toxin-antitoxin system antitoxin MazE, at 2,150,255 to 2,150,503 mazE BNILDI_10640: mazF - endoribonuclease MazF, at 2,150,503 to 2,150,838 mazF BNILDI_10645: mazG - nucleoside triphosphate pyrophosphohydrolase, at 2,150,909 to 2,151,700 mazG BNILDI_10650: pyrG - CTP synthase (glutamine hydrolyzing), at 2,151,928 to 2,153,565 pyrG Position (kb) 2150 2151 2152Strain fitness (log2 ratio) -2 -1 0 1 2at 2149.924 kb on - strand, within relAat 2149.970 kb on + strandat 2149.981 kb on + strandat 2149.981 kb on + strandat 2149.982 kb on - strandat 2149.989 kb on - strandat 2149.989 kb on - strandat 2150.271 kb on + strandat 2150.383 kb on + strand, within mazEat 2150.384 kb on - strand, within mazEat 2150.413 kb on + strand, within mazEat 2150.414 kb on - strand, within mazEat 2150.507 kb on + strandat 2150.617 kb on + strand, within mazFat 2150.618 kb on - strand, within mazFat 2150.634 kb on + strand, within mazFat 2150.634 kb on + strand, within mazFat 2150.723 kb on + strand, within mazFat 2150.742 kb on + strand, within mazFat 2150.798 kb on + strand, within mazFat 2150.836 kb on + strandat 2150.842 kb on + strandat 2150.936 kb on - strandat 2150.938 kb on + strandat 2151.011 kb on + strand, within mazGat 2151.011 kb on + strand, within mazGat 2151.011 kb on + strand, within mazGat 2151.151 kb on + strand, within mazGat 2151.333 kb on + strand, within mazGat 2151.440 kb on + strand, within mazGat 2151.441 kb on - strand, within mazGat 2151.441 kb on - strand, within mazGat 2151.441 kb on - strand, within mazGat 2151.605 kb on - strand, within mazG

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction JK36
remove
2,149,924 - relA BNILDI_10630 0.89 -1.0
2,149,970 + +0.3
2,149,981 + +0.5
2,149,981 + +0.3
2,149,982 - +0.3
2,149,989 - +2.4
2,149,989 - -1.8
2,150,271 + -1.0
2,150,383 + mazE BNILDI_10635 0.51 -2.1
2,150,384 - mazE BNILDI_10635 0.52 -0.1
2,150,413 + mazE BNILDI_10635 0.63 +1.8
2,150,414 - mazE BNILDI_10635 0.64 +2.2
2,150,507 + -0.2
2,150,617 + mazF BNILDI_10640 0.34 -1.2
2,150,618 - mazF BNILDI_10640 0.34 +0.4
2,150,634 + mazF BNILDI_10640 0.39 -0.8
2,150,634 + mazF BNILDI_10640 0.39 +1.1
2,150,723 + mazF BNILDI_10640 0.65 +0.5
2,150,742 + mazF BNILDI_10640 0.71 +0.5
2,150,798 + mazF BNILDI_10640 0.88 -0.9
2,150,836 + -0.2
2,150,842 + +0.3
2,150,936 - -1.0
2,150,938 + -0.5
2,151,011 + mazG BNILDI_10645 0.13 +1.5
2,151,011 + mazG BNILDI_10645 0.13 +0.8
2,151,011 + mazG BNILDI_10645 0.13 +1.5
2,151,151 + mazG BNILDI_10645 0.31 -1.4
2,151,333 + mazG BNILDI_10645 0.54 -0.0
2,151,440 + mazG BNILDI_10645 0.67 +0.2
2,151,441 - mazG BNILDI_10645 0.67 +0.1
2,151,441 - mazG BNILDI_10645 0.67 +0.0
2,151,441 - mazG BNILDI_10645 0.67 +0.8
2,151,605 - mazG BNILDI_10645 0.88 +2.1

Or see this region's nucleotide sequence