Strain Fitness in Escherichia coli ECRC62 around BNILDI_07540

Experiment: JK36

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBNILDI_07535 and BNILDI_07540 overlap by 21 nucleotidesBNILDI_07540 and BNILDI_07545 are separated by 127 nucleotidesBNILDI_07545 and BNILDI_07550 are separated by 484 nucleotides BNILDI_07535: BNILDI_07535 - PTS beta-glucoside transporter subunit IIBC, at 1,503,151 to 1,504,038 _07535 BNILDI_07540: BNILDI_07540 - hypothetical protein, at 1,504,018 to 1,504,110 _07540 BNILDI_07545: BNILDI_07545 - IS66 family insertion sequence hypothetical protein, at 1,504,238 to 1,504,474 _07545 BNILDI_07550: BNILDI_07550 - DUF4432 domain-containing protein, at 1,504,959 to 1,505,972 _07550 Position (kb) 1504 1505Strain fitness (log2 ratio) -2 -1 0 1 2at 1503.037 kb on + strandat 1503.038 kb on - strandat 1503.091 kb on + strandat 1503.111 kb on + strandat 1503.220 kb on - strandat 1503.228 kb on - strandat 1503.289 kb on + strand, within BNILDI_07535at 1503.290 kb on - strand, within BNILDI_07535at 1503.290 kb on - strand, within BNILDI_07535at 1503.345 kb on - strand, within BNILDI_07535at 1503.345 kb on - strand, within BNILDI_07535at 1503.350 kb on - strand, within BNILDI_07535at 1503.353 kb on + strand, within BNILDI_07535at 1503.353 kb on + strand, within BNILDI_07535at 1503.388 kb on - strand, within BNILDI_07535at 1503.456 kb on + strand, within BNILDI_07535at 1503.457 kb on - strand, within BNILDI_07535at 1503.457 kb on - strand, within BNILDI_07535at 1503.457 kb on - strand, within BNILDI_07535at 1503.465 kb on + strand, within BNILDI_07535at 1503.476 kb on + strand, within BNILDI_07535at 1503.538 kb on - strand, within BNILDI_07535at 1503.574 kb on - strand, within BNILDI_07535at 1503.592 kb on + strand, within BNILDI_07535at 1503.593 kb on - strand, within BNILDI_07535at 1503.593 kb on - strand, within BNILDI_07535at 1503.652 kb on - strand, within BNILDI_07535at 1503.765 kb on - strand, within BNILDI_07535at 1503.784 kb on + strand, within BNILDI_07535at 1503.836 kb on + strand, within BNILDI_07535at 1503.837 kb on - strand, within BNILDI_07535at 1504.040 kb on - strand, within BNILDI_07540at 1504.089 kb on + strand, within BNILDI_07540at 1504.100 kb on - strand, within BNILDI_07540at 1504.150 kb on - strandat 1504.165 kb on + strandat 1504.252 kb on - strandat 1504.311 kb on - strand, within BNILDI_07545at 1504.311 kb on - strand, within BNILDI_07545at 1504.359 kb on - strand, within BNILDI_07545at 1504.360 kb on + strand, within BNILDI_07545at 1504.360 kb on + strand, within BNILDI_07545at 1504.361 kb on - strand, within BNILDI_07545at 1504.535 kb on + strandat 1504.536 kb on - strandat 1504.536 kb on - strandat 1504.571 kb on + strandat 1504.571 kb on + strandat 1504.572 kb on - strandat 1504.572 kb on - strandat 1504.572 kb on - strandat 1504.577 kb on - strandat 1504.590 kb on + strandat 1504.602 kb on - strandat 1504.622 kb on - strandat 1504.630 kb on - strandat 1504.630 kb on - strandat 1504.655 kb on + strandat 1504.741 kb on + strandat 1504.742 kb on - strandat 1504.745 kb on + strandat 1504.824 kb on - strandat 1504.886 kb on + strandat 1504.886 kb on + strandat 1504.887 kb on - strandat 1504.918 kb on + strandat 1504.953 kb on - strandat 1505.045 kb on - strandat 1505.102 kb on + strand, within BNILDI_07550

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Per-strain Table

Position Strand Gene LocusTag Fraction JK36
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1,503,037 + -0.8
1,503,038 - +0.8
1,503,091 + -0.9
1,503,111 + -2.2
1,503,220 - -1.1
1,503,228 - -1.2
1,503,289 + BNILDI_07535 0.16 +0.8
1,503,290 - BNILDI_07535 0.16 +1.2
1,503,290 - BNILDI_07535 0.16 +0.3
1,503,345 - BNILDI_07535 0.22 -0.7
1,503,345 - BNILDI_07535 0.22 -1.0
1,503,350 - BNILDI_07535 0.22 -0.9
1,503,353 + BNILDI_07535 0.23 -1.5
1,503,353 + BNILDI_07535 0.23 +0.9
1,503,388 - BNILDI_07535 0.27 +0.8
1,503,456 + BNILDI_07535 0.34 +0.9
1,503,457 - BNILDI_07535 0.34 +0.5
1,503,457 - BNILDI_07535 0.34 +0.6
1,503,457 - BNILDI_07535 0.34 -0.2
1,503,465 + BNILDI_07535 0.35 -0.7
1,503,476 + BNILDI_07535 0.37 +0.1
1,503,538 - BNILDI_07535 0.44 -0.4
1,503,574 - BNILDI_07535 0.48 +0.4
1,503,592 + BNILDI_07535 0.50 -0.7
1,503,593 - BNILDI_07535 0.50 +0.0
1,503,593 - BNILDI_07535 0.50 +0.2
1,503,652 - BNILDI_07535 0.56 -0.9
1,503,765 - BNILDI_07535 0.69 -0.8
1,503,784 + BNILDI_07535 0.71 -0.0
1,503,836 + BNILDI_07535 0.77 -0.1
1,503,837 - BNILDI_07535 0.77 +0.9
1,504,040 - BNILDI_07540 0.24 -0.7
1,504,089 + BNILDI_07540 0.76 +0.8
1,504,100 - BNILDI_07540 0.88 -0.7
1,504,150 - +1.9
1,504,165 + +0.4
1,504,252 - -0.7
1,504,311 - BNILDI_07545 0.31 -0.4
1,504,311 - BNILDI_07545 0.31 -0.4
1,504,359 - BNILDI_07545 0.51 +1.3
1,504,360 + BNILDI_07545 0.51 -0.3
1,504,360 + BNILDI_07545 0.51 -0.1
1,504,361 - BNILDI_07545 0.52 +0.1
1,504,535 + +0.9
1,504,536 - +0.0
1,504,536 - -0.1
1,504,571 + +1.3
1,504,571 + -1.5
1,504,572 - +0.2
1,504,572 - +0.0
1,504,572 - +0.2
1,504,577 - +0.4
1,504,590 + +1.9
1,504,602 - +0.8
1,504,622 - +0.8
1,504,630 - -0.4
1,504,630 - +1.9
1,504,655 + -1.4
1,504,741 + -1.1
1,504,742 - +1.2
1,504,745 + -0.1
1,504,824 - +0.9
1,504,886 + -0.1
1,504,886 + -0.1
1,504,887 - +0.2
1,504,918 + +0.1
1,504,953 - +0.7
1,505,045 - -1.1
1,505,102 + BNILDI_07550 0.14 +0.3

Or see this region's nucleotide sequence