Experiment: JK36
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BNILDI_07130 and BNILDI_07135 are separated by 52 nucleotides BNILDI_07135 and BNILDI_07140 are separated by 42 nucleotides BNILDI_07140 and BNILDI_07145 are separated by 20 nucleotides
BNILDI_07130: BNILDI_07130 - Bacterial extracellular solute-binding protein, family 7, at 1,421,411 to 1,422,382
_07130
BNILDI_07135: BNILDI_07135 - TRAP transporter large permease, at 1,422,435 to 1,423,736
_07135
BNILDI_07140: BNILDI_07140 - TRAP transporter small permease, at 1,423,779 to 1,424,255
_07140
BNILDI_07145: BNILDI_07145 - oxidoreductase, at 1,424,276 to 1,426,357
_07145
Position (kb) 1422
1423
1424 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1421.489 kb on + strand at 1421.512 kb on + strand, within BNILDI_07130 at 1421.513 kb on - strand, within BNILDI_07130 at 1421.513 kb on - strand, within BNILDI_07130 at 1421.516 kb on + strand, within BNILDI_07130 at 1421.516 kb on + strand, within BNILDI_07130 at 1421.595 kb on + strand, within BNILDI_07130 at 1421.595 kb on + strand, within BNILDI_07130 at 1421.595 kb on + strand, within BNILDI_07130 at 1421.596 kb on - strand, within BNILDI_07130 at 1421.596 kb on - strand, within BNILDI_07130 at 1421.596 kb on - strand, within BNILDI_07130 at 1421.596 kb on - strand, within BNILDI_07130 at 1421.804 kb on - strand, within BNILDI_07130 at 1421.805 kb on + strand, within BNILDI_07130 at 1421.806 kb on - strand, within BNILDI_07130 at 1422.211 kb on + strand, within BNILDI_07130 at 1422.546 kb on - strand at 1422.570 kb on - strand, within BNILDI_07135 at 1422.874 kb on - strand, within BNILDI_07135 at 1423.143 kb on - strand, within BNILDI_07135 at 1423.156 kb on - strand, within BNILDI_07135 at 1423.218 kb on - strand, within BNILDI_07135 at 1423.218 kb on - strand, within BNILDI_07135 at 1423.223 kb on + strand, within BNILDI_07135 at 1423.244 kb on - strand, within BNILDI_07135 at 1423.257 kb on - strand, within BNILDI_07135 at 1423.260 kb on - strand, within BNILDI_07135 at 1423.260 kb on - strand, within BNILDI_07135 at 1423.260 kb on - strand, within BNILDI_07135 at 1423.260 kb on - strand, within BNILDI_07135 at 1423.272 kb on - strand, within BNILDI_07135 at 1423.272 kb on - strand, within BNILDI_07135 at 1423.311 kb on - strand, within BNILDI_07135 at 1423.328 kb on - strand, within BNILDI_07135 at 1423.430 kb on + strand, within BNILDI_07135 at 1423.556 kb on + strand, within BNILDI_07135 at 1423.556 kb on + strand, within BNILDI_07135 at 1423.557 kb on - strand, within BNILDI_07135 at 1423.671 kb on + strand at 1423.707 kb on + strand at 1423.944 kb on + strand, within BNILDI_07140 at 1423.945 kb on - strand, within BNILDI_07140 at 1424.031 kb on + strand, within BNILDI_07140 at 1424.144 kb on + strand, within BNILDI_07140 at 1424.554 kb on - strand, within BNILDI_07145 at 1424.596 kb on + strand, within BNILDI_07145 at 1424.675 kb on + strand, within BNILDI_07145
Per-strain Table
Position Strand Gene LocusTag Fraction JK36 remove 1,421,489 + +1.9 1,421,512 + BNILDI_07130 0.10 -1.1 1,421,513 - BNILDI_07130 0.10 -0.0 1,421,513 - BNILDI_07130 0.10 -0.7 1,421,516 + BNILDI_07130 0.11 -0.8 1,421,516 + BNILDI_07130 0.11 -1.1 1,421,595 + BNILDI_07130 0.19 -0.7 1,421,595 + BNILDI_07130 0.19 +0.2 1,421,595 + BNILDI_07130 0.19 -0.9 1,421,596 - BNILDI_07130 0.19 -0.4 1,421,596 - BNILDI_07130 0.19 -0.2 1,421,596 - BNILDI_07130 0.19 +0.3 1,421,596 - BNILDI_07130 0.19 -0.7 1,421,804 - BNILDI_07130 0.40 -0.3 1,421,805 + BNILDI_07130 0.41 -0.9 1,421,806 - BNILDI_07130 0.41 +1.7 1,422,211 + BNILDI_07130 0.82 -0.2 1,422,546 - -0.2 1,422,570 - BNILDI_07135 0.10 +0.4 1,422,874 - BNILDI_07135 0.34 -0.2 1,423,143 - BNILDI_07135 0.54 -0.8 1,423,156 - BNILDI_07135 0.55 -0.3 1,423,218 - BNILDI_07135 0.60 -0.9 1,423,218 - BNILDI_07135 0.60 +0.4 1,423,223 + BNILDI_07135 0.61 +0.9 1,423,244 - BNILDI_07135 0.62 +0.3 1,423,257 - BNILDI_07135 0.63 -0.2 1,423,260 - BNILDI_07135 0.63 -2.6 1,423,260 - BNILDI_07135 0.63 -1.5 1,423,260 - BNILDI_07135 0.63 -0.9 1,423,260 - BNILDI_07135 0.63 -1.4 1,423,272 - BNILDI_07135 0.64 +0.7 1,423,272 - BNILDI_07135 0.64 +1.9 1,423,311 - BNILDI_07135 0.67 -1.3 1,423,328 - BNILDI_07135 0.69 +2.3 1,423,430 + BNILDI_07135 0.76 -0.2 1,423,556 + BNILDI_07135 0.86 -0.2 1,423,556 + BNILDI_07135 0.86 -0.4 1,423,557 - BNILDI_07135 0.86 +0.5 1,423,671 + +1.6 1,423,707 + -0.7 1,423,944 + BNILDI_07140 0.35 +1.3 1,423,945 - BNILDI_07140 0.35 -0.2 1,424,031 + BNILDI_07140 0.53 +2.9 1,424,144 + BNILDI_07140 0.77 +3.5 1,424,554 - BNILDI_07145 0.13 +0.6 1,424,596 + BNILDI_07145 0.15 -0.5 1,424,675 + BNILDI_07145 0.19 +1.0
Or see this region's nucleotide sequence