Experiment: JK36
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt orn and Gly_trna are separated by 210 nucleotides Gly_trna and Gly_trna are separated by 36 nucleotides Gly_trna and Gly_trna are separated by 35 nucleotides Gly_trna and yjeV are separated by 233 nucleotides yjeV and queG overlap by 18 nucleotides
BNILDI_06915: orn - oligoribonuclease, at 1,386,346 to 1,386,891
orn
BNILDI_06920: Gly_trna - tRNA-Gly(gcc), at 1,387,102 to 1,387,177
_trna
BNILDI_06925: Gly_trna - tRNA-Gly(gcc), at 1,387,214 to 1,387,289
_trna
BNILDI_06930: Gly_trna - tRNA-Gly(gcc), at 1,387,325 to 1,387,400
_trna
BNILDI_06935: yjeV - Uncharacterized protein YjeV, at 1,387,634 to 1,387,687
yjeV
BNILDI_06940: queG - tRNA epoxyqueuosine(34) reductase QueG, at 1,387,670 to 1,388,809
queG
Position (kb)
1387
1388 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 1386.909 kb on + strand at 1386.909 kb on + strand at 1386.910 kb on - strand at 1387.078 kb on + strand at 1387.763 kb on + strand at 1387.787 kb on + strand, within queG at 1387.787 kb on + strand, within queG at 1387.787 kb on + strand, within queG at 1387.787 kb on + strand, within queG at 1387.788 kb on - strand, within queG at 1387.788 kb on - strand, within queG at 1387.788 kb on - strand, within queG at 1387.868 kb on + strand, within queG at 1387.882 kb on + strand, within queG at 1387.883 kb on - strand, within queG at 1387.909 kb on + strand, within queG at 1387.967 kb on + strand, within queG at 1387.967 kb on + strand, within queG at 1387.992 kb on - strand, within queG at 1388.057 kb on - strand, within queG at 1388.057 kb on - strand, within queG at 1388.079 kb on + strand, within queG at 1388.079 kb on + strand, within queG at 1388.084 kb on - strand, within queG at 1388.146 kb on - strand, within queG at 1388.152 kb on + strand, within queG at 1388.152 kb on + strand, within queG at 1388.153 kb on - strand, within queG at 1388.173 kb on + strand, within queG at 1388.173 kb on + strand, within queG at 1388.173 kb on + strand, within queG at 1388.173 kb on + strand, within queG at 1388.336 kb on - strand, within queG
Per-strain Table
Position Strand Gene LocusTag Fraction JK36 remove 1,386,909 + -0.3 1,386,909 + -0.2 1,386,910 - -1.7 1,387,078 + -0.1 1,387,763 + +2.9 1,387,787 + queG BNILDI_06940 0.10 +0.1 1,387,787 + queG BNILDI_06940 0.10 +1.0 1,387,787 + queG BNILDI_06940 0.10 +0.6 1,387,787 + queG BNILDI_06940 0.10 +1.9 1,387,788 - queG BNILDI_06940 0.10 -0.3 1,387,788 - queG BNILDI_06940 0.10 -0.9 1,387,788 - queG BNILDI_06940 0.10 +0.7 1,387,868 + queG BNILDI_06940 0.17 +1.3 1,387,882 + queG BNILDI_06940 0.19 +0.6 1,387,883 - queG BNILDI_06940 0.19 -0.1 1,387,909 + queG BNILDI_06940 0.21 -1.9 1,387,967 + queG BNILDI_06940 0.26 +0.2 1,387,967 + queG BNILDI_06940 0.26 +0.9 1,387,992 - queG BNILDI_06940 0.28 -0.2 1,388,057 - queG BNILDI_06940 0.34 -0.7 1,388,057 - queG BNILDI_06940 0.34 -0.1 1,388,079 + queG BNILDI_06940 0.36 +1.2 1,388,079 + queG BNILDI_06940 0.36 +0.4 1,388,084 - queG BNILDI_06940 0.36 -0.1 1,388,146 - queG BNILDI_06940 0.42 -2.3 1,388,152 + queG BNILDI_06940 0.42 -1.5 1,388,152 + queG BNILDI_06940 0.42 -1.3 1,388,153 - queG BNILDI_06940 0.42 +0.9 1,388,173 + queG BNILDI_06940 0.44 +4.5 1,388,173 + queG BNILDI_06940 0.44 +0.1 1,388,173 + queG BNILDI_06940 0.44 -2.4 1,388,173 + queG BNILDI_06940 0.44 +0.9 1,388,336 - queG BNILDI_06940 0.58 +1.3
Or see this region's nucleotide sequence