Experiment: JK36
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BNILDI_05015 and BNILDI_05020 are separated by 960 nucleotides BNILDI_05020 and rarD are separated by 46 nucleotides rarD and yigI are separated by 51 nucleotides
BNILDI_05015: BNILDI_05015 - DUF3289 domain-containing protein, at 993,269 to 994,117
_05015
BNILDI_05020: BNILDI_05020 - Membrane protein, at 995,078 to 995,377
_05020
BNILDI_05025: rarD - EamA family transporter RarD, at 995,424 to 996,311
rarD
BNILDI_05030: yigI - thioesterase family protein, at 996,363 to 996,830
yigI
Position (kb) 995
996 Strain fitness (log2 ratio) -1
0
1
2 at 994.418 kb on + strand at 994.429 kb on + strand at 994.449 kb on - strand at 994.453 kb on - strand at 994.454 kb on + strand at 994.477 kb on - strand at 994.967 kb on + strand at 995.076 kb on - strand at 995.220 kb on + strand, within BNILDI_05020 at 995.228 kb on - strand, within BNILDI_05020 at 995.230 kb on - strand, within BNILDI_05020 at 995.230 kb on - strand, within BNILDI_05020 at 995.236 kb on - strand, within BNILDI_05020 at 995.274 kb on - strand, within BNILDI_05020 at 995.276 kb on - strand, within BNILDI_05020 at 995.297 kb on - strand, within BNILDI_05020 at 995.531 kb on - strand, within rarD at 995.531 kb on - strand, within rarD at 995.773 kb on - strand, within rarD at 995.855 kb on + strand, within rarD at 995.990 kb on + strand, within rarD at 995.990 kb on + strand, within rarD at 995.990 kb on + strand, within rarD at 995.995 kb on + strand, within rarD at 996.018 kb on - strand, within rarD at 996.018 kb on - strand, within rarD at 996.128 kb on - strand, within rarD at 996.217 kb on + strand, within rarD at 996.218 kb on - strand, within rarD at 996.221 kb on - strand, within rarD at 996.235 kb on + strand at 996.258 kb on - strand at 996.279 kb on + strand at 996.280 kb on - strand at 996.283 kb on - strand at 996.356 kb on + strand at 996.369 kb on + strand at 996.369 kb on + strand at 996.376 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction JK36 remove 994,418 + +2.1 994,429 + +0.1 994,449 - +1.1 994,453 - +0.2 994,454 + -1.7 994,477 - -0.7 994,967 + +0.7 995,076 - +1.5 995,220 + BNILDI_05020 0.47 -0.3 995,228 - BNILDI_05020 0.50 -0.7 995,230 - BNILDI_05020 0.51 +1.3 995,230 - BNILDI_05020 0.51 +0.1 995,236 - BNILDI_05020 0.53 -0.2 995,274 - BNILDI_05020 0.65 +0.4 995,276 - BNILDI_05020 0.66 +0.3 995,297 - BNILDI_05020 0.73 +2.7 995,531 - rarD BNILDI_05025 0.12 +1.3 995,531 - rarD BNILDI_05025 0.12 +0.8 995,773 - rarD BNILDI_05025 0.39 +0.2 995,855 + rarD BNILDI_05025 0.49 -0.9 995,990 + rarD BNILDI_05025 0.64 -0.6 995,990 + rarD BNILDI_05025 0.64 +0.5 995,990 + rarD BNILDI_05025 0.64 +0.2 995,995 + rarD BNILDI_05025 0.64 -0.2 996,018 - rarD BNILDI_05025 0.67 +0.9 996,018 - rarD BNILDI_05025 0.67 -1.2 996,128 - rarD BNILDI_05025 0.79 -0.8 996,217 + rarD BNILDI_05025 0.89 -1.3 996,218 - rarD BNILDI_05025 0.89 -0.1 996,221 - rarD BNILDI_05025 0.90 +0.5 996,235 + -0.6 996,258 - -0.1 996,279 + -1.1 996,280 - +0.4 996,283 - +0.1 996,356 + +0.0 996,369 + +0.2 996,369 + +0.9 996,376 + +0.2
Or see this region's nucleotide sequence