Experiment: JK36
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yigE and corA are separated by 369 nucleotides corA and BNILDI_05010 are separated by 53 nucleotides BNILDI_05010 and BNILDI_05015 overlap by 4 nucleotides
BNILDI_05000: yigE - Uncharacterized protein YigE, at 990,655 to 991,419
yigE
BNILDI_05005: corA - magnesium/cobalt transporter CorA, at 991,789 to 992,739
corA
BNILDI_05010: BNILDI_05010 - DUF943 domain-containing protein, at 992,793 to 993,272
_05010
BNILDI_05015: BNILDI_05015 - DUF3289 domain-containing protein, at 993,269 to 994,117
_05015
Position (kb) 991
992
993 Strain fitness (log2 ratio) -2
-1
0
1
2 at 990.791 kb on + strand, within yigE at 990.856 kb on - strand, within yigE at 990.858 kb on + strand, within yigE at 990.858 kb on + strand, within yigE at 990.858 kb on + strand, within yigE at 990.859 kb on - strand, within yigE at 990.919 kb on + strand, within yigE at 990.920 kb on - strand, within yigE at 990.973 kb on - strand, within yigE at 991.011 kb on + strand, within yigE at 991.025 kb on + strand, within yigE at 991.025 kb on + strand, within yigE at 991.079 kb on - strand, within yigE at 991.139 kb on + strand, within yigE at 991.140 kb on - strand, within yigE at 991.179 kb on + strand, within yigE at 991.180 kb on - strand, within yigE at 991.185 kb on + strand, within yigE at 991.204 kb on + strand, within yigE at 991.204 kb on + strand, within yigE at 991.204 kb on + strand, within yigE at 991.204 kb on + strand, within yigE at 991.205 kb on - strand, within yigE at 991.205 kb on - strand, within yigE at 991.278 kb on - strand, within yigE at 991.346 kb on - strand at 991.346 kb on - strand at 991.405 kb on + strand at 991.422 kb on + strand at 991.422 kb on + strand at 991.422 kb on + strand at 991.423 kb on - strand at 991.493 kb on + strand at 991.494 kb on - strand at 991.543 kb on + strand at 991.543 kb on + strand at 991.544 kb on - strand at 991.565 kb on + strand at 991.565 kb on + strand at 991.565 kb on + strand at 991.566 kb on - strand at 991.595 kb on + strand at 991.595 kb on + strand at 991.595 kb on + strand at 991.611 kb on - strand at 991.635 kb on + strand at 991.635 kb on + strand at 991.642 kb on - strand at 991.768 kb on + strand at 991.768 kb on + strand at 991.913 kb on + strand, within corA at 992.007 kb on + strand, within corA at 992.007 kb on + strand, within corA at 992.137 kb on - strand, within corA at 992.243 kb on - strand, within corA at 992.274 kb on + strand, within corA at 992.299 kb on + strand, within corA at 992.583 kb on - strand, within corA at 992.977 kb on + strand, within BNILDI_05010 at 993.034 kb on + strand, within BNILDI_05010 at 993.034 kb on + strand, within BNILDI_05010 at 993.175 kb on + strand, within BNILDI_05010 at 993.179 kb on + strand, within BNILDI_05010
Per-strain Table
Position Strand Gene LocusTag Fraction JK36 remove 990,791 + yigE BNILDI_05000 0.18 -2.1 990,856 - yigE BNILDI_05000 0.26 +0.3 990,858 + yigE BNILDI_05000 0.27 +0.5 990,858 + yigE BNILDI_05000 0.27 -1.8 990,858 + yigE BNILDI_05000 0.27 -0.2 990,859 - yigE BNILDI_05000 0.27 -0.5 990,919 + yigE BNILDI_05000 0.35 +0.9 990,920 - yigE BNILDI_05000 0.35 +0.0 990,973 - yigE BNILDI_05000 0.42 +0.3 991,011 + yigE BNILDI_05000 0.47 +0.9 991,025 + yigE BNILDI_05000 0.48 -0.5 991,025 + yigE BNILDI_05000 0.48 +0.4 991,079 - yigE BNILDI_05000 0.55 +0.3 991,139 + yigE BNILDI_05000 0.63 -1.6 991,140 - yigE BNILDI_05000 0.63 +0.0 991,179 + yigE BNILDI_05000 0.68 -0.4 991,180 - yigE BNILDI_05000 0.69 +0.3 991,185 + yigE BNILDI_05000 0.69 -0.2 991,204 + yigE BNILDI_05000 0.72 -0.5 991,204 + yigE BNILDI_05000 0.72 +0.1 991,204 + yigE BNILDI_05000 0.72 +0.2 991,204 + yigE BNILDI_05000 0.72 +2.1 991,205 - yigE BNILDI_05000 0.72 -0.1 991,205 - yigE BNILDI_05000 0.72 +0.4 991,278 - yigE BNILDI_05000 0.81 +0.2 991,346 - -0.5 991,346 - -0.7 991,405 + -0.8 991,422 + -0.1 991,422 + +0.3 991,422 + +0.2 991,423 - -0.1 991,493 + -0.1 991,494 - -0.6 991,543 + +0.5 991,543 + -0.2 991,544 - -0.5 991,565 + -1.6 991,565 + +1.5 991,565 + +0.3 991,566 - +2.1 991,595 + -0.1 991,595 + -0.5 991,595 + -0.1 991,611 - +1.1 991,635 + +0.2 991,635 + -0.2 991,642 - +2.1 991,768 + +0.2 991,768 + +0.8 991,913 + corA BNILDI_05005 0.13 +1.1 992,007 + corA BNILDI_05005 0.23 +2.1 992,007 + corA BNILDI_05005 0.23 +0.3 992,137 - corA BNILDI_05005 0.37 +2.7 992,243 - corA BNILDI_05005 0.48 +1.1 992,274 + corA BNILDI_05005 0.51 -0.1 992,299 + corA BNILDI_05005 0.54 +1.1 992,583 - corA BNILDI_05005 0.83 +0.1 992,977 + BNILDI_05010 0.38 -0.7 993,034 + BNILDI_05010 0.50 +2.1 993,034 + BNILDI_05010 0.50 +0.8 993,175 + BNILDI_05010 0.80 +2.1 993,179 + BNILDI_05010 0.80 +0.1
Or see this region's nucleotide sequence