Experiment: JK36
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rffG and rfbA are separated by 18 nucleotides rfbA and rffC overlap by 23 nucleotides rffC and rffA are separated by 4 nucleotides
BNILDI_04830: rffG - dTDP-glucose 4,6-dehydratase, at 959,447 to 960,514
rffG
BNILDI_04835: rfbA - glucose-1-phosphate thymidylyltransferase RfbA, at 960,533 to 961,414
rfbA
BNILDI_04840: rffC - dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase, at 961,392 to 962,066
rffC
BNILDI_04845: rffA - dTDP-4-amino-4,6-dideoxygalactose transaminase, at 962,071 to 963,201
rffA
Position (kb) 960
961
962 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3
4 at 959.624 kb on - strand, within rffG at 959.652 kb on + strand, within rffG at 959.653 kb on - strand, within rffG at 959.716 kb on + strand, within rffG at 959.762 kb on + strand, within rffG at 959.762 kb on + strand, within rffG at 959.763 kb on - strand, within rffG at 959.763 kb on - strand, within rffG at 959.763 kb on - strand, within rffG at 959.764 kb on + strand, within rffG at 959.764 kb on + strand, within rffG at 959.764 kb on + strand, within rffG at 959.765 kb on - strand, within rffG at 959.765 kb on - strand, within rffG at 959.765 kb on - strand, within rffG at 959.765 kb on - strand, within rffG at 959.840 kb on - strand, within rffG at 959.856 kb on + strand, within rffG at 959.856 kb on + strand, within rffG at 959.859 kb on - strand, within rffG at 959.859 kb on - strand, within rffG at 959.859 kb on - strand, within rffG at 960.013 kb on + strand, within rffG at 960.018 kb on - strand, within rffG at 960.018 kb on - strand, within rffG at 960.018 kb on - strand, within rffG at 960.094 kb on - strand, within rffG at 960.094 kb on - strand, within rffG at 960.095 kb on + strand, within rffG at 960.096 kb on - strand, within rffG at 960.096 kb on - strand, within rffG at 960.128 kb on + strand, within rffG at 960.129 kb on - strand, within rffG at 960.191 kb on + strand, within rffG at 960.193 kb on + strand, within rffG at 960.193 kb on + strand, within rffG at 960.196 kb on + strand, within rffG at 960.197 kb on - strand, within rffG at 960.437 kb on + strand at 960.541 kb on + strand at 960.541 kb on + strand at 960.541 kb on + strand at 960.542 kb on - strand at 960.542 kb on - strand at 960.542 kb on - strand at 960.545 kb on - strand at 960.692 kb on - strand, within rfbA at 960.703 kb on + strand, within rfbA at 960.704 kb on - strand, within rfbA at 960.737 kb on - strand, within rfbA at 960.761 kb on + strand, within rfbA at 960.803 kb on - strand, within rfbA at 960.995 kb on - strand, within rfbA at 961.053 kb on - strand, within rfbA at 961.059 kb on - strand, within rfbA at 961.123 kb on + strand, within rfbA at 961.142 kb on + strand, within rfbA at 961.142 kb on + strand, within rfbA at 961.142 kb on + strand, within rfbA at 961.143 kb on - strand, within rfbA at 961.143 kb on - strand, within rfbA at 961.235 kb on - strand, within rfbA at 961.251 kb on + strand, within rfbA at 961.252 kb on - strand, within rfbA at 961.271 kb on - strand, within rfbA at 961.374 kb on - strand at 961.386 kb on + strand at 961.469 kb on + strand, within rffC at 961.469 kb on + strand, within rffC at 961.470 kb on - strand, within rffC at 961.548 kb on - strand, within rffC at 961.592 kb on - strand, within rffC at 961.648 kb on + strand, within rffC at 961.678 kb on + strand, within rffC at 961.678 kb on + strand, within rffC at 961.678 kb on + strand, within rffC at 961.678 kb on + strand, within rffC at 961.678 kb on + strand, within rffC at 961.816 kb on + strand, within rffC at 961.948 kb on - strand, within rffC at 962.014 kb on - strand at 962.018 kb on - strand at 962.018 kb on - strand at 962.018 kb on - strand at 962.018 kb on - strand at 962.018 kb on - strand at 962.018 kb on - strand at 962.018 kb on - strand at 962.018 kb on - strand at 962.036 kb on - strand at 962.036 kb on - strand at 962.058 kb on + strand at 962.058 kb on + strand at 962.059 kb on - strand at 962.059 kb on - strand at 962.116 kb on + strand at 962.117 kb on - strand at 962.117 kb on - strand at 962.117 kb on - strand at 962.117 kb on - strand at 962.118 kb on + strand at 962.119 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction JK36 remove 959,624 - rffG BNILDI_04830 0.17 -1.9 959,652 + rffG BNILDI_04830 0.19 -1.1 959,653 - rffG BNILDI_04830 0.19 -3.4 959,716 + rffG BNILDI_04830 0.25 -1.7 959,762 + rffG BNILDI_04830 0.29 -2.8 959,762 + rffG BNILDI_04830 0.29 -2.4 959,763 - rffG BNILDI_04830 0.30 +2.1 959,763 - rffG BNILDI_04830 0.30 -1.4 959,763 - rffG BNILDI_04830 0.30 -2.7 959,764 + rffG BNILDI_04830 0.30 -1.4 959,764 + rffG BNILDI_04830 0.30 -0.5 959,764 + rffG BNILDI_04830 0.30 -1.4 959,765 - rffG BNILDI_04830 0.30 -1.1 959,765 - rffG BNILDI_04830 0.30 -0.7 959,765 - rffG BNILDI_04830 0.30 -1.7 959,765 - rffG BNILDI_04830 0.30 -4.8 959,840 - rffG BNILDI_04830 0.37 -1.2 959,856 + rffG BNILDI_04830 0.38 -2.8 959,856 + rffG BNILDI_04830 0.38 -5.8 959,859 - rffG BNILDI_04830 0.39 +0.5 959,859 - rffG BNILDI_04830 0.39 -4.2 959,859 - rffG BNILDI_04830 0.39 -3.7 960,013 + rffG BNILDI_04830 0.53 -1.7 960,018 - rffG BNILDI_04830 0.53 +1.1 960,018 - rffG BNILDI_04830 0.53 -3.2 960,018 - rffG BNILDI_04830 0.53 -1.4 960,094 - rffG BNILDI_04830 0.61 -0.9 960,094 - rffG BNILDI_04830 0.61 -5.7 960,095 + rffG BNILDI_04830 0.61 -3.7 960,096 - rffG BNILDI_04830 0.61 +0.1 960,096 - rffG BNILDI_04830 0.61 -1.1 960,128 + rffG BNILDI_04830 0.64 +1.1 960,129 - rffG BNILDI_04830 0.64 -5.8 960,191 + rffG BNILDI_04830 0.70 -0.7 960,193 + rffG BNILDI_04830 0.70 -0.5 960,193 + rffG BNILDI_04830 0.70 +0.1 960,196 + rffG BNILDI_04830 0.70 -2.4 960,197 - rffG BNILDI_04830 0.70 +0.5 960,437 + -0.2 960,541 + -1.4 960,541 + -3.6 960,541 + -0.5 960,542 - -1.4 960,542 - -0.0 960,542 - -0.2 960,545 - +1.1 960,692 - rfbA BNILDI_04835 0.18 -0.5 960,703 + rfbA BNILDI_04835 0.19 -0.4 960,704 - rfbA BNILDI_04835 0.19 +0.9 960,737 - rfbA BNILDI_04835 0.23 +2.1 960,761 + rfbA BNILDI_04835 0.26 -2.3 960,803 - rfbA BNILDI_04835 0.31 -0.4 960,995 - rfbA BNILDI_04835 0.52 -1.1 961,053 - rfbA BNILDI_04835 0.59 -1.6 961,059 - rfbA BNILDI_04835 0.60 +0.7 961,123 + rfbA BNILDI_04835 0.67 -2.5 961,142 + rfbA BNILDI_04835 0.69 -2.9 961,142 + rfbA BNILDI_04835 0.69 -1.6 961,142 + rfbA BNILDI_04835 0.69 -4.2 961,143 - rfbA BNILDI_04835 0.69 -0.5 961,143 - rfbA BNILDI_04835 0.69 +4.1 961,235 - rfbA BNILDI_04835 0.80 +0.6 961,251 + rfbA BNILDI_04835 0.81 -1.5 961,252 - rfbA BNILDI_04835 0.82 -0.7 961,271 - rfbA BNILDI_04835 0.84 +0.8 961,374 - +0.4 961,386 + -0.6 961,469 + rffC BNILDI_04840 0.11 -0.6 961,469 + rffC BNILDI_04840 0.11 -0.8 961,470 - rffC BNILDI_04840 0.12 -0.4 961,548 - rffC BNILDI_04840 0.23 -0.8 961,592 - rffC BNILDI_04840 0.30 -2.0 961,648 + rffC BNILDI_04840 0.38 +0.1 961,678 + rffC BNILDI_04840 0.42 -0.7 961,678 + rffC BNILDI_04840 0.42 -2.6 961,678 + rffC BNILDI_04840 0.42 +1.1 961,678 + rffC BNILDI_04840 0.42 +1.1 961,678 + rffC BNILDI_04840 0.42 -1.1 961,816 + rffC BNILDI_04840 0.63 -6.7 961,948 - rffC BNILDI_04840 0.82 +1.2 962,014 - -0.6 962,018 - -1.6 962,018 - +0.4 962,018 - -0.1 962,018 - +0.7 962,018 - +0.1 962,018 - -2.0 962,018 - -0.3 962,018 - -1.4 962,036 - +0.0 962,036 - -0.3 962,058 + +2.1 962,058 + -1.6 962,059 - +0.3 962,059 - +1.0 962,116 + +0.4 962,117 - -0.6 962,117 - -0.3 962,117 - +0.6 962,117 - +0.1 962,118 + +2.1 962,119 - -0.7
Or see this region's nucleotide sequence