Experiment: JK36
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yhfT and BNILDI_02560 are separated by 11 nucleotides BNILDI_02560 and php are separated by 10 nucleotides php and yhfW overlap by 4 nucleotides
BNILDI_02555: yhfT - Uncharacterized protein YhfT, at 482,791 to 484,095
yhfT
BNILDI_02560: BNILDI_02560 - DUF2620 domain-containing protein, at 484,107 to 484,460
_02560
BNILDI_02565: php - phosphotriesterase-related protein, at 484,471 to 485,349
php
BNILDI_02570: yhfW - phosphopentomutase, at 485,346 to 486,572
yhfW
Position (kb) 484
485
486 Strain fitness (log2 ratio) -1
0
1
2 at 483.559 kb on - strand, within yhfT at 483.698 kb on - strand, within yhfT at 483.715 kb on + strand, within yhfT at 483.715 kb on + strand, within yhfT at 483.716 kb on - strand, within yhfT at 483.716 kb on - strand, within yhfT at 483.718 kb on + strand, within yhfT at 483.718 kb on + strand, within yhfT at 483.718 kb on + strand, within yhfT at 483.718 kb on + strand, within yhfT at 483.719 kb on - strand, within yhfT at 483.719 kb on - strand, within yhfT at 483.719 kb on - strand, within yhfT at 483.719 kb on - strand, within yhfT at 483.769 kb on - strand, within yhfT at 483.967 kb on - strand at 483.967 kb on - strand at 483.968 kb on + strand at 483.968 kb on + strand at 484.083 kb on + strand at 484.220 kb on + strand, within BNILDI_02560 at 484.220 kb on + strand, within BNILDI_02560 at 484.254 kb on - strand, within BNILDI_02560 at 484.255 kb on + strand, within BNILDI_02560 at 484.301 kb on + strand, within BNILDI_02560 at 484.304 kb on + strand, within BNILDI_02560 at 484.304 kb on + strand, within BNILDI_02560 at 484.305 kb on - strand, within BNILDI_02560 at 484.305 kb on - strand, within BNILDI_02560 at 484.318 kb on + strand, within BNILDI_02560 at 484.321 kb on + strand, within BNILDI_02560 at 484.322 kb on - strand, within BNILDI_02560 at 484.434 kb on + strand at 484.434 kb on + strand at 484.572 kb on - strand, within php at 484.703 kb on + strand, within php at 484.876 kb on - strand, within php at 485.099 kb on + strand, within php at 485.144 kb on - strand, within php at 485.154 kb on + strand, within php at 485.154 kb on + strand, within php at 485.178 kb on - strand, within php at 485.202 kb on + strand, within php at 485.252 kb on + strand, within php at 485.252 kb on + strand, within php at 485.253 kb on - strand, within php at 485.301 kb on + strand at 485.302 kb on - strand at 485.302 kb on - strand at 485.328 kb on - strand at 485.328 kb on - strand at 485.460 kb on + strand at 485.461 kb on - strand at 485.647 kb on + strand, within yhfW at 485.706 kb on - strand, within yhfW at 485.706 kb on - strand, within yhfW at 485.808 kb on - strand, within yhfW at 485.890 kb on + strand, within yhfW at 485.924 kb on - strand, within yhfW at 485.954 kb on + strand, within yhfW at 485.954 kb on + strand, within yhfW at 486.023 kb on + strand, within yhfW at 486.024 kb on - strand, within yhfW at 486.024 kb on - strand, within yhfW at 486.117 kb on - strand, within yhfW at 486.117 kb on - strand, within yhfW at 486.118 kb on + strand, within yhfW at 486.129 kb on + strand, within yhfW at 486.228 kb on + strand, within yhfW at 486.229 kb on - strand, within yhfW at 486.324 kb on - strand, within yhfW
Per-strain Table
Position Strand Gene LocusTag Fraction JK36 remove 483,559 - yhfT BNILDI_02555 0.59 +0.6 483,698 - yhfT BNILDI_02555 0.70 -0.1 483,715 + yhfT BNILDI_02555 0.71 -1.3 483,715 + yhfT BNILDI_02555 0.71 -0.1 483,716 - yhfT BNILDI_02555 0.71 +0.2 483,716 - yhfT BNILDI_02555 0.71 -0.2 483,718 + yhfT BNILDI_02555 0.71 -1.4 483,718 + yhfT BNILDI_02555 0.71 +0.8 483,718 + yhfT BNILDI_02555 0.71 -0.3 483,718 + yhfT BNILDI_02555 0.71 +0.5 483,719 - yhfT BNILDI_02555 0.71 -0.3 483,719 - yhfT BNILDI_02555 0.71 +0.2 483,719 - yhfT BNILDI_02555 0.71 -0.3 483,719 - yhfT BNILDI_02555 0.71 +0.2 483,769 - yhfT BNILDI_02555 0.75 +0.4 483,967 - +0.4 483,967 - +0.7 483,968 + +2.0 483,968 + -0.5 484,083 + +1.6 484,220 + BNILDI_02560 0.32 -0.5 484,220 + BNILDI_02560 0.32 -1.7 484,254 - BNILDI_02560 0.42 +1.7 484,255 + BNILDI_02560 0.42 -1.0 484,301 + BNILDI_02560 0.55 -0.0 484,304 + BNILDI_02560 0.56 -0.5 484,304 + BNILDI_02560 0.56 +2.6 484,305 - BNILDI_02560 0.56 -1.0 484,305 - BNILDI_02560 0.56 +0.0 484,318 + BNILDI_02560 0.60 -1.2 484,321 + BNILDI_02560 0.60 +0.4 484,322 - BNILDI_02560 0.61 +1.0 484,434 + -0.2 484,434 + -1.2 484,572 - php BNILDI_02565 0.11 -1.6 484,703 + php BNILDI_02565 0.26 -0.6 484,876 - php BNILDI_02565 0.46 -0.4 485,099 + php BNILDI_02565 0.71 +0.5 485,144 - php BNILDI_02565 0.77 -0.0 485,154 + php BNILDI_02565 0.78 +1.5 485,154 + php BNILDI_02565 0.78 +0.6 485,178 - php BNILDI_02565 0.80 +1.5 485,202 + php BNILDI_02565 0.83 -0.5 485,252 + php BNILDI_02565 0.89 +0.3 485,252 + php BNILDI_02565 0.89 -0.0 485,253 - php BNILDI_02565 0.89 +0.1 485,301 + -0.6 485,302 - +1.6 485,302 - -1.2 485,328 - -1.3 485,328 - +0.4 485,460 + +0.2 485,461 - +0.5 485,647 + yhfW BNILDI_02570 0.25 -0.2 485,706 - yhfW BNILDI_02570 0.29 -0.4 485,706 - yhfW BNILDI_02570 0.29 -0.6 485,808 - yhfW BNILDI_02570 0.38 -0.4 485,890 + yhfW BNILDI_02570 0.44 +1.6 485,924 - yhfW BNILDI_02570 0.47 -0.5 485,954 + yhfW BNILDI_02570 0.50 +0.8 485,954 + yhfW BNILDI_02570 0.50 -0.8 486,023 + yhfW BNILDI_02570 0.55 -0.7 486,024 - yhfW BNILDI_02570 0.55 +1.0 486,024 - yhfW BNILDI_02570 0.55 -0.4 486,117 - yhfW BNILDI_02570 0.63 -0.8 486,117 - yhfW BNILDI_02570 0.63 -0.5 486,118 + yhfW BNILDI_02570 0.63 -0.9 486,129 + yhfW BNILDI_02570 0.64 -0.5 486,228 + yhfW BNILDI_02570 0.72 +1.0 486,229 - yhfW BNILDI_02570 0.72 +2.0 486,324 - yhfW BNILDI_02570 0.80 -0.0
Or see this region's nucleotide sequence