Strain Fitness in Escherichia coli ECRC62 around BNILDI_02005

Experiment: JK36

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyhdE and mreD are separated by 8 nucleotidesmreD and mreC overlap by 1 nucleotidesmreC and mreB are separated by 65 nucleotides BNILDI_01995: yhdE - nucleoside triphosphate pyrophosphatase YhdE, at 394,852 to 395,445 yhdE BNILDI_02000: mreD - rod shape-determining protein MreD, at 395,454 to 395,942 mreD BNILDI_02005: mreC - rod shape-determining protein MreC, at 395,942 to 397,045 mreC BNILDI_02010: mreB - rod shape-determining protein MreB, at 397,111 to 398,154 mreB Position (kb) 395 396 397 398Strain fitness (log2 ratio) -2 -1 0 1at 394.946 kb on + strand, within yhdEat 394.946 kb on + strand, within yhdEat 394.957 kb on + strand, within yhdEat 394.957 kb on + strand, within yhdEat 394.958 kb on - strand, within yhdEat 394.958 kb on - strand, within yhdEat 394.958 kb on - strand, within yhdEat 394.958 kb on - strand, within yhdEat 395.036 kb on + strand, within yhdEat 395.232 kb on + strand, within yhdEat 395.315 kb on + strand, within yhdEat 395.315 kb on + strand, within yhdEat 395.315 kb on + strand, within yhdEat 395.316 kb on - strand, within yhdEat 395.316 kb on - strand, within yhdEat 395.361 kb on + strand, within yhdEat 395.367 kb on + strand, within yhdEat 395.429 kb on - strandat 395.429 kb on - strandat 395.429 kb on - strandat 395.433 kb on - strandat 395.456 kb on - strandat 397.051 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction JK36
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394,946 + yhdE BNILDI_01995 0.16 +0.4
394,946 + yhdE BNILDI_01995 0.16 +1.4
394,957 + yhdE BNILDI_01995 0.18 +1.2
394,957 + yhdE BNILDI_01995 0.18 +0.9
394,958 - yhdE BNILDI_01995 0.18 +0.2
394,958 - yhdE BNILDI_01995 0.18 -0.4
394,958 - yhdE BNILDI_01995 0.18 -0.5
394,958 - yhdE BNILDI_01995 0.18 +0.8
395,036 + yhdE BNILDI_01995 0.31 -0.1
395,232 + yhdE BNILDI_01995 0.64 -0.7
395,315 + yhdE BNILDI_01995 0.78 -2.2
395,315 + yhdE BNILDI_01995 0.78 -1.2
395,315 + yhdE BNILDI_01995 0.78 -1.5
395,316 - yhdE BNILDI_01995 0.78 +0.8
395,316 - yhdE BNILDI_01995 0.78 +0.6
395,361 + yhdE BNILDI_01995 0.86 -0.1
395,367 + yhdE BNILDI_01995 0.87 -0.5
395,429 - +0.9
395,429 - +0.1
395,429 - -0.2
395,433 - +0.6
395,456 - -0.3
397,051 - +0.9

Or see this region's nucleotide sequence