Experiment: JK36
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yhcN and yhcO are separated by 55 nucleotides yhcO and aaeB are separated by 91 nucleotides aaeB and aaeA are separated by 5 nucleotides aaeA and aaeX are separated by 7 nucleotides
BNILDI_01950: yhcN - peroxide/acid stress response protein YhcN, at 382,885 to 383,148
yhcN
BNILDI_01955: yhcO - Uncharacterized protein YhcO, at 383,204 to 383,476
yhcO
BNILDI_01960: aaeB - p-hydroxybenzoic acid efflux pump subunit AaeB, at 383,568 to 385,535
aaeB
BNILDI_01965: aaeA - p-hydroxybenzoic acid efflux pump subunit AaeA, at 385,541 to 386,473
aaeA
BNILDI_01970: aaeX - p-hydroxybenzoic acid efflux pump operon protein AaeX, at 386,481 to 386,684
aaeX
Position (kb) 383
384
385
386 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 382.860 kb on - strand at 382.868 kb on - strand at 382.904 kb on + strand at 382.904 kb on + strand at 382.913 kb on + strand, within yhcN at 383.038 kb on - strand, within yhcN at 383.107 kb on - strand, within yhcN at 383.267 kb on + strand, within yhcO at 383.267 kb on + strand, within yhcO at 383.267 kb on + strand, within yhcO at 383.268 kb on - strand, within yhcO at 383.386 kb on + strand, within yhcO at 383.393 kb on - strand, within yhcO at 383.466 kb on + strand at 383.470 kb on + strand at 383.523 kb on - strand at 383.526 kb on + strand at 383.526 kb on + strand at 383.527 kb on - strand at 383.569 kb on + strand at 383.569 kb on + strand at 383.569 kb on + strand at 383.593 kb on + strand at 383.597 kb on + strand at 383.597 kb on + strand at 383.598 kb on - strand at 383.598 kb on - strand at 383.598 kb on - strand at 383.661 kb on + strand at 383.720 kb on + strand at 383.740 kb on - strand at 383.740 kb on - strand at 383.882 kb on + strand, within aaeB at 383.883 kb on - strand, within aaeB at 383.988 kb on - strand, within aaeB at 383.994 kb on + strand, within aaeB at 384.020 kb on + strand, within aaeB at 384.020 kb on + strand, within aaeB at 384.038 kb on + strand, within aaeB at 384.135 kb on - strand, within aaeB at 384.135 kb on - strand, within aaeB at 384.135 kb on - strand, within aaeB at 384.135 kb on - strand, within aaeB at 384.138 kb on + strand, within aaeB at 384.139 kb on - strand, within aaeB at 384.139 kb on - strand, within aaeB at 384.189 kb on + strand, within aaeB at 384.189 kb on + strand, within aaeB at 384.221 kb on + strand, within aaeB at 384.224 kb on + strand, within aaeB at 384.224 kb on + strand, within aaeB at 384.225 kb on - strand, within aaeB at 384.261 kb on - strand, within aaeB at 384.468 kb on - strand, within aaeB at 384.558 kb on - strand, within aaeB at 384.612 kb on - strand, within aaeB at 384.613 kb on + strand, within aaeB at 384.613 kb on + strand, within aaeB at 384.613 kb on + strand, within aaeB at 384.613 kb on + strand, within aaeB at 384.614 kb on - strand, within aaeB at 384.614 kb on - strand, within aaeB at 384.614 kb on - strand, within aaeB at 384.769 kb on + strand, within aaeB at 384.770 kb on - strand, within aaeB at 384.810 kb on - strand, within aaeB at 384.822 kb on + strand, within aaeB at 384.966 kb on + strand, within aaeB at 384.967 kb on - strand, within aaeB at 384.967 kb on - strand, within aaeB at 385.085 kb on + strand, within aaeB at 385.085 kb on + strand, within aaeB at 385.113 kb on - strand, within aaeB at 385.158 kb on - strand, within aaeB at 385.235 kb on + strand, within aaeB at 385.310 kb on + strand, within aaeB at 385.311 kb on - strand, within aaeB at 385.630 kb on + strand at 385.631 kb on - strand at 385.724 kb on - strand, within aaeA at 385.887 kb on + strand, within aaeA at 385.888 kb on - strand, within aaeA at 385.888 kb on - strand, within aaeA at 385.895 kb on + strand, within aaeA at 385.895 kb on + strand, within aaeA at 385.896 kb on - strand, within aaeA at 385.899 kb on + strand, within aaeA at 385.900 kb on - strand, within aaeA at 385.900 kb on - strand, within aaeA at 385.900 kb on - strand, within aaeA at 385.900 kb on - strand, within aaeA at 385.949 kb on - strand, within aaeA at 386.081 kb on + strand, within aaeA at 386.082 kb on - strand, within aaeA at 386.082 kb on - strand, within aaeA at 386.082 kb on - strand, within aaeA at 386.084 kb on + strand, within aaeA at 386.084 kb on + strand, within aaeA at 386.187 kb on + strand, within aaeA at 386.187 kb on + strand, within aaeA at 386.187 kb on + strand, within aaeA at 386.187 kb on + strand, within aaeA at 386.188 kb on - strand, within aaeA at 386.188 kb on - strand, within aaeA at 386.252 kb on + strand, within aaeA at 386.253 kb on - strand, within aaeA at 386.253 kb on - strand, within aaeA at 386.253 kb on - strand, within aaeA at 386.382 kb on + strand at 386.383 kb on - strand at 386.426 kb on + strand at 386.459 kb on + strand at 386.459 kb on + strand at 386.459 kb on + strand at 386.462 kb on + strand at 386.463 kb on - strand at 386.506 kb on + strand, within aaeX at 386.521 kb on + strand, within aaeX at 386.522 kb on - strand, within aaeX
Per-strain Table
Position Strand Gene LocusTag Fraction JK36 remove 382,860 - -1.0 382,868 - +0.7 382,904 + -0.3 382,904 + -0.1 382,913 + yhcN BNILDI_01950 0.11 -0.5 383,038 - yhcN BNILDI_01950 0.58 +0.5 383,107 - yhcN BNILDI_01950 0.84 -0.1 383,267 + yhcO BNILDI_01955 0.23 -0.2 383,267 + yhcO BNILDI_01955 0.23 +0.7 383,267 + yhcO BNILDI_01955 0.23 +1.9 383,268 - yhcO BNILDI_01955 0.23 +0.4 383,386 + yhcO BNILDI_01955 0.67 -1.4 383,393 - yhcO BNILDI_01955 0.69 -1.5 383,466 + -0.1 383,470 + -0.3 383,523 - -0.6 383,526 + -0.4 383,526 + -0.1 383,527 - +0.3 383,569 + -0.8 383,569 + -1.2 383,569 + +1.1 383,593 + -0.3 383,597 + -0.9 383,597 + +0.8 383,598 - +0.7 383,598 - +0.9 383,598 - -3.5 383,661 + +0.2 383,720 + -1.4 383,740 - -0.1 383,740 - -0.8 383,882 + aaeB BNILDI_01960 0.16 -0.4 383,883 - aaeB BNILDI_01960 0.16 +0.3 383,988 - aaeB BNILDI_01960 0.21 -0.0 383,994 + aaeB BNILDI_01960 0.22 -0.5 384,020 + aaeB BNILDI_01960 0.23 +0.0 384,020 + aaeB BNILDI_01960 0.23 -1.3 384,038 + aaeB BNILDI_01960 0.24 +0.3 384,135 - aaeB BNILDI_01960 0.29 -1.5 384,135 - aaeB BNILDI_01960 0.29 +0.3 384,135 - aaeB BNILDI_01960 0.29 -0.1 384,135 - aaeB BNILDI_01960 0.29 -2.1 384,138 + aaeB BNILDI_01960 0.29 +1.1 384,139 - aaeB BNILDI_01960 0.29 -0.8 384,139 - aaeB BNILDI_01960 0.29 +0.5 384,189 + aaeB BNILDI_01960 0.32 -0.2 384,189 + aaeB BNILDI_01960 0.32 -0.3 384,221 + aaeB BNILDI_01960 0.33 -0.4 384,224 + aaeB BNILDI_01960 0.33 +0.4 384,224 + aaeB BNILDI_01960 0.33 +0.4 384,225 - aaeB BNILDI_01960 0.33 +0.3 384,261 - aaeB BNILDI_01960 0.35 -0.2 384,468 - aaeB BNILDI_01960 0.46 -0.5 384,558 - aaeB BNILDI_01960 0.50 +0.0 384,612 - aaeB BNILDI_01960 0.53 -0.4 384,613 + aaeB BNILDI_01960 0.53 +0.9 384,613 + aaeB BNILDI_01960 0.53 -0.1 384,613 + aaeB BNILDI_01960 0.53 -2.6 384,613 + aaeB BNILDI_01960 0.53 -0.7 384,614 - aaeB BNILDI_01960 0.53 -1.1 384,614 - aaeB BNILDI_01960 0.53 +0.1 384,614 - aaeB BNILDI_01960 0.53 +0.1 384,769 + aaeB BNILDI_01960 0.61 -2.2 384,770 - aaeB BNILDI_01960 0.61 -1.4 384,810 - aaeB BNILDI_01960 0.63 +0.0 384,822 + aaeB BNILDI_01960 0.64 +0.2 384,966 + aaeB BNILDI_01960 0.71 -0.5 384,967 - aaeB BNILDI_01960 0.71 -2.2 384,967 - aaeB BNILDI_01960 0.71 -0.4 385,085 + aaeB BNILDI_01960 0.77 +1.1 385,085 + aaeB BNILDI_01960 0.77 -1.1 385,113 - aaeB BNILDI_01960 0.79 -1.1 385,158 - aaeB BNILDI_01960 0.81 -0.0 385,235 + aaeB BNILDI_01960 0.85 +0.8 385,310 + aaeB BNILDI_01960 0.89 +0.4 385,311 - aaeB BNILDI_01960 0.89 -0.1 385,630 + -0.4 385,631 - -1.0 385,724 - aaeA BNILDI_01965 0.20 -0.1 385,887 + aaeA BNILDI_01965 0.37 -0.8 385,888 - aaeA BNILDI_01965 0.37 -2.6 385,888 - aaeA BNILDI_01965 0.37 -0.1 385,895 + aaeA BNILDI_01965 0.38 -0.5 385,895 + aaeA BNILDI_01965 0.38 +0.2 385,896 - aaeA BNILDI_01965 0.38 +1.6 385,899 + aaeA BNILDI_01965 0.38 +0.3 385,900 - aaeA BNILDI_01965 0.38 +0.8 385,900 - aaeA BNILDI_01965 0.38 +1.1 385,900 - aaeA BNILDI_01965 0.38 -0.0 385,900 - aaeA BNILDI_01965 0.38 +0.6 385,949 - aaeA BNILDI_01965 0.44 -0.6 386,081 + aaeA BNILDI_01965 0.58 +0.3 386,082 - aaeA BNILDI_01965 0.58 -0.3 386,082 - aaeA BNILDI_01965 0.58 +0.6 386,082 - aaeA BNILDI_01965 0.58 +0.5 386,084 + aaeA BNILDI_01965 0.58 +1.9 386,084 + aaeA BNILDI_01965 0.58 -0.2 386,187 + aaeA BNILDI_01965 0.69 +1.7 386,187 + aaeA BNILDI_01965 0.69 -0.5 386,187 + aaeA BNILDI_01965 0.69 -0.1 386,187 + aaeA BNILDI_01965 0.69 +0.1 386,188 - aaeA BNILDI_01965 0.69 +0.1 386,188 - aaeA BNILDI_01965 0.69 +0.7 386,252 + aaeA BNILDI_01965 0.76 +0.5 386,253 - aaeA BNILDI_01965 0.76 +0.9 386,253 - aaeA BNILDI_01965 0.76 -0.5 386,253 - aaeA BNILDI_01965 0.76 +0.1 386,382 + -0.4 386,383 - -1.6 386,426 + -0.8 386,459 + -0.6 386,459 + -1.7 386,459 + -0.4 386,462 + +0.0 386,463 - +0.2 386,506 + aaeX BNILDI_01970 0.12 -0.6 386,521 + aaeX BNILDI_01970 0.20 +0.5 386,522 - aaeX BNILDI_01970 0.20 -0.4
Or see this region's nucleotide sequence