Experiment: JK36
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt alx and sstT are separated by 615 nucleotides sstT and ygjV are separated by 4 nucleotides ygjV and uxaA are separated by 82 nucleotides
BNILDI_01175: alx - TerC family membrane protein Alx, at 231,777 to 232,742
alx
BNILDI_01180: sstT - serine/threonine transporter SstT, at 233,358 to 234,602
sstT
BNILDI_01185: ygjV - Inner membrane protein YgjV, at 234,607 to 235,158
ygjV
BNILDI_01190: uxaA - altronate dehydratase, at 235,241 to 236,728
uxaA
Position (kb) 233
234
235 Strain fitness (log2 ratio) -2
-1
0
1
2 at 232.530 kb on + strand, within alx at 232.632 kb on + strand, within alx at 232.632 kb on + strand, within alx at 232.633 kb on - strand, within alx at 232.637 kb on + strand, within alx at 232.691 kb on + strand at 232.750 kb on + strand at 232.752 kb on + strand at 232.752 kb on + strand at 232.755 kb on + strand at 232.772 kb on + strand at 232.772 kb on + strand at 232.773 kb on - strand at 232.798 kb on - strand at 232.800 kb on + strand at 232.801 kb on - strand at 232.801 kb on - strand at 232.804 kb on + strand at 232.804 kb on + strand at 232.808 kb on + strand at 232.809 kb on - strand at 232.809 kb on - strand at 232.820 kb on - strand at 232.827 kb on + strand at 232.827 kb on + strand at 232.828 kb on - strand at 232.828 kb on - strand at 232.935 kb on + strand at 233.072 kb on + strand at 233.072 kb on + strand at 233.074 kb on + strand at 233.081 kb on + strand at 233.089 kb on + strand at 233.111 kb on + strand at 233.132 kb on + strand at 233.132 kb on + strand at 233.132 kb on + strand at 233.132 kb on + strand at 233.132 kb on + strand at 233.133 kb on - strand at 233.133 kb on - strand at 233.137 kb on + strand at 233.141 kb on + strand at 233.152 kb on - strand at 233.254 kb on + strand at 233.383 kb on + strand at 233.413 kb on + strand at 233.495 kb on - strand, within sstT at 233.495 kb on - strand, within sstT at 233.498 kb on + strand, within sstT at 233.498 kb on + strand, within sstT at 233.564 kb on + strand, within sstT at 233.564 kb on + strand, within sstT at 233.565 kb on - strand, within sstT at 233.565 kb on - strand, within sstT at 233.565 kb on - strand, within sstT at 233.620 kb on - strand, within sstT at 233.798 kb on + strand, within sstT at 233.802 kb on + strand, within sstT at 233.802 kb on + strand, within sstT at 233.803 kb on - strand, within sstT at 233.886 kb on - strand, within sstT at 233.964 kb on - strand, within sstT at 233.964 kb on - strand, within sstT at 234.033 kb on - strand, within sstT at 234.033 kb on - strand, within sstT at 234.037 kb on + strand, within sstT at 234.135 kb on + strand, within sstT at 234.215 kb on + strand, within sstT at 234.215 kb on + strand, within sstT at 234.254 kb on + strand, within sstT at 234.254 kb on + strand, within sstT at 234.305 kb on + strand, within sstT at 234.428 kb on + strand, within sstT at 234.429 kb on - strand, within sstT at 234.429 kb on - strand, within sstT at 234.429 kb on - strand, within sstT at 234.479 kb on + strand at 234.584 kb on + strand at 234.596 kb on + strand at 234.597 kb on - strand at 234.597 kb on - strand at 234.709 kb on - strand, within ygjV at 234.820 kb on - strand, within ygjV at 234.840 kb on + strand, within ygjV at 234.869 kb on - strand, within ygjV at 234.921 kb on + strand, within ygjV at 234.921 kb on + strand, within ygjV at 234.960 kb on + strand, within ygjV at 234.970 kb on - strand, within ygjV at 234.970 kb on - strand, within ygjV at 235.007 kb on + strand, within ygjV at 235.030 kb on + strand, within ygjV at 235.049 kb on + strand, within ygjV at 235.050 kb on - strand, within ygjV at 235.161 kb on + strand at 235.161 kb on + strand at 235.242 kb on + strand at 235.245 kb on - strand at 235.471 kb on - strand, within uxaA at 235.563 kb on - strand, within uxaA at 235.563 kb on - strand, within uxaA
Per-strain Table
Position Strand Gene LocusTag Fraction JK36 remove 232,530 + alx BNILDI_01175 0.78 -0.7 232,632 + alx BNILDI_01175 0.89 -1.0 232,632 + alx BNILDI_01175 0.89 +0.3 232,633 - alx BNILDI_01175 0.89 +1.8 232,637 + alx BNILDI_01175 0.89 +1.3 232,691 + +0.7 232,750 + -0.6 232,752 + +1.5 232,752 + +0.3 232,755 + -0.4 232,772 + +0.6 232,772 + +1.3 232,773 - -1.1 232,798 - +0.3 232,800 + +0.5 232,801 - +1.0 232,801 - +0.6 232,804 + +1.1 232,804 + +0.9 232,808 + -0.2 232,809 - -0.7 232,809 - +0.9 232,820 - +0.4 232,827 + -0.9 232,827 + -0.3 232,828 - -1.8 232,828 - -0.5 232,935 + -0.0 233,072 + -0.0 233,072 + +0.5 233,074 + +0.5 233,081 + -2.0 233,089 + -0.5 233,111 + +0.5 233,132 + +0.3 233,132 + +1.9 233,132 + +1.8 233,132 + -0.4 233,132 + +0.2 233,133 - -0.6 233,133 - -1.7 233,137 + +0.2 233,141 + +0.0 233,152 - +1.0 233,254 + -0.5 233,383 + +1.9 233,413 + +1.2 233,495 - sstT BNILDI_01180 0.11 +0.3 233,495 - sstT BNILDI_01180 0.11 -1.2 233,498 + sstT BNILDI_01180 0.11 +0.4 233,498 + sstT BNILDI_01180 0.11 -2.5 233,564 + sstT BNILDI_01180 0.17 +1.2 233,564 + sstT BNILDI_01180 0.17 +0.2 233,565 - sstT BNILDI_01180 0.17 -0.2 233,565 - sstT BNILDI_01180 0.17 -0.7 233,565 - sstT BNILDI_01180 0.17 -0.3 233,620 - sstT BNILDI_01180 0.21 -0.9 233,798 + sstT BNILDI_01180 0.35 -2.3 233,802 + sstT BNILDI_01180 0.36 +0.3 233,802 + sstT BNILDI_01180 0.36 +0.7 233,803 - sstT BNILDI_01180 0.36 +0.2 233,886 - sstT BNILDI_01180 0.42 +0.8 233,964 - sstT BNILDI_01180 0.49 +0.9 233,964 - sstT BNILDI_01180 0.49 -0.3 234,033 - sstT BNILDI_01180 0.54 +0.9 234,033 - sstT BNILDI_01180 0.54 -0.3 234,037 + sstT BNILDI_01180 0.55 -0.1 234,135 + sstT BNILDI_01180 0.62 +0.9 234,215 + sstT BNILDI_01180 0.69 -0.4 234,215 + sstT BNILDI_01180 0.69 +0.2 234,254 + sstT BNILDI_01180 0.72 +0.1 234,254 + sstT BNILDI_01180 0.72 +1.1 234,305 + sstT BNILDI_01180 0.76 +0.7 234,428 + sstT BNILDI_01180 0.86 +0.3 234,429 - sstT BNILDI_01180 0.86 -0.6 234,429 - sstT BNILDI_01180 0.86 +0.6 234,429 - sstT BNILDI_01180 0.86 -0.0 234,479 + -0.7 234,584 + -0.1 234,596 + +1.9 234,597 - -0.2 234,597 - -0.1 234,709 - ygjV BNILDI_01185 0.18 +0.7 234,820 - ygjV BNILDI_01185 0.39 -1.8 234,840 + ygjV BNILDI_01185 0.42 -0.7 234,869 - ygjV BNILDI_01185 0.47 +1.0 234,921 + ygjV BNILDI_01185 0.57 -1.0 234,921 + ygjV BNILDI_01185 0.57 -0.3 234,960 + ygjV BNILDI_01185 0.64 -0.3 234,970 - ygjV BNILDI_01185 0.66 +0.3 234,970 - ygjV BNILDI_01185 0.66 +0.0 235,007 + ygjV BNILDI_01185 0.72 -0.4 235,030 + ygjV BNILDI_01185 0.77 +0.5 235,049 + ygjV BNILDI_01185 0.80 +0.4 235,050 - ygjV BNILDI_01185 0.80 +0.9 235,161 + -1.4 235,161 + -0.5 235,242 + +0.4 235,245 - +0.5 235,471 - uxaA BNILDI_01190 0.15 -1.3 235,563 - uxaA BNILDI_01190 0.22 +0.5 235,563 - uxaA BNILDI_01190 0.22 -0.3
Or see this region's nucleotide sequence