Experiment: JK36
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ecpR and ecpA are separated by 74 nucleotides ecpA and ecpB are separated by 58 nucleotides ecpB and ecpC are separated by 25 nucleotides
BNILDI_00095: ecpR - ECP biosynthesis operon DNA-binding transcriptional regulator EcpR, at 26,363 to 26,905
ecpR
BNILDI_00100: ecpA - common pilus major fimbrillin subunit EcpA, at 26,980 to 27,567
ecpA
BNILDI_00105: ecpB - fimbrial chaperone EcpB, at 27,626 to 28,294
ecpB
BNILDI_00110: ecpC - fimbrial usher EcpC, at 28,320 to 30,845
ecpC
Position (kb) 27
28
29 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 26.843 kb on + strand, within ecpR at 26.890 kb on + strand at 26.919 kb on + strand at 27.003 kb on - strand at 27.053 kb on + strand, within ecpA at 27.053 kb on + strand, within ecpA at 27.054 kb on - strand, within ecpA at 27.108 kb on + strand, within ecpA at 27.148 kb on + strand, within ecpA at 27.189 kb on - strand, within ecpA at 27.249 kb on + strand, within ecpA at 27.407 kb on - strand, within ecpA at 27.407 kb on - strand, within ecpA at 27.423 kb on + strand, within ecpA at 27.477 kb on + strand, within ecpA at 27.565 kb on + strand at 27.700 kb on + strand, within ecpB at 27.701 kb on - strand, within ecpB at 27.702 kb on + strand, within ecpB at 27.703 kb on - strand, within ecpB at 27.703 kb on - strand, within ecpB at 27.703 kb on - strand, within ecpB at 27.703 kb on - strand, within ecpB at 27.826 kb on + strand, within ecpB at 27.826 kb on + strand, within ecpB at 27.855 kb on + strand, within ecpB at 27.856 kb on - strand, within ecpB at 27.944 kb on + strand, within ecpB at 28.108 kb on + strand, within ecpB at 28.109 kb on - strand, within ecpB at 28.187 kb on + strand, within ecpB at 28.187 kb on + strand, within ecpB at 28.273 kb on + strand at 28.273 kb on + strand at 28.274 kb on - strand at 28.274 kb on - strand at 28.292 kb on + strand at 28.293 kb on - strand at 28.293 kb on - strand at 28.296 kb on + strand at 28.297 kb on - strand at 28.297 kb on - strand at 28.414 kb on + strand at 28.414 kb on + strand at 28.415 kb on - strand at 28.429 kb on + strand at 28.443 kb on - strand at 28.495 kb on - strand at 28.553 kb on + strand at 28.576 kb on + strand, within ecpC at 28.576 kb on + strand, within ecpC at 28.577 kb on - strand, within ecpC at 28.577 kb on - strand, within ecpC at 28.777 kb on + strand, within ecpC at 28.842 kb on + strand, within ecpC at 28.842 kb on + strand, within ecpC at 28.844 kb on + strand, within ecpC at 28.845 kb on - strand, within ecpC at 28.845 kb on - strand, within ecpC at 28.857 kb on + strand, within ecpC at 28.859 kb on + strand, within ecpC at 28.899 kb on + strand, within ecpC at 28.900 kb on - strand, within ecpC at 28.998 kb on + strand, within ecpC at 29.001 kb on - strand, within ecpC at 29.010 kb on + strand, within ecpC at 29.010 kb on + strand, within ecpC at 29.209 kb on + strand, within ecpC at 29.209 kb on + strand, within ecpC
Per-strain Table
Position Strand Gene LocusTag Fraction JK36 remove 26,843 + ecpR BNILDI_00095 0.88 +1.6 26,890 + -0.4 26,919 + -0.3 27,003 - -1.1 27,053 + ecpA BNILDI_00100 0.12 +0.9 27,053 + ecpA BNILDI_00100 0.12 -1.3 27,054 - ecpA BNILDI_00100 0.13 -0.3 27,108 + ecpA BNILDI_00100 0.22 +0.7 27,148 + ecpA BNILDI_00100 0.29 -0.1 27,189 - ecpA BNILDI_00100 0.36 +1.0 27,249 + ecpA BNILDI_00100 0.46 -1.1 27,407 - ecpA BNILDI_00100 0.73 -0.7 27,407 - ecpA BNILDI_00100 0.73 -0.4 27,423 + ecpA BNILDI_00100 0.75 +0.4 27,477 + ecpA BNILDI_00100 0.85 -0.1 27,565 + +0.7 27,700 + ecpB BNILDI_00105 0.11 +1.5 27,701 - ecpB BNILDI_00105 0.11 +3.1 27,702 + ecpB BNILDI_00105 0.11 -0.8 27,703 - ecpB BNILDI_00105 0.12 +1.0 27,703 - ecpB BNILDI_00105 0.12 +0.6 27,703 - ecpB BNILDI_00105 0.12 -0.3 27,703 - ecpB BNILDI_00105 0.12 +0.3 27,826 + ecpB BNILDI_00105 0.30 +0.0 27,826 + ecpB BNILDI_00105 0.30 +1.9 27,855 + ecpB BNILDI_00105 0.34 +0.8 27,856 - ecpB BNILDI_00105 0.34 -0.2 27,944 + ecpB BNILDI_00105 0.48 +0.1 28,108 + ecpB BNILDI_00105 0.72 -2.5 28,109 - ecpB BNILDI_00105 0.72 -0.2 28,187 + ecpB BNILDI_00105 0.84 -0.7 28,187 + ecpB BNILDI_00105 0.84 -0.2 28,273 + +0.6 28,273 + +0.5 28,274 - +1.0 28,274 - +0.4 28,292 + +1.0 28,293 - -0.1 28,293 - -1.0 28,296 + -0.4 28,297 - -0.6 28,297 - -0.6 28,414 + +1.9 28,414 + +0.1 28,415 - +0.1 28,429 + +0.1 28,443 - -1.6 28,495 - -1.3 28,553 + +1.3 28,576 + ecpC BNILDI_00110 0.10 -0.1 28,576 + ecpC BNILDI_00110 0.10 -0.8 28,577 - ecpC BNILDI_00110 0.10 -0.2 28,577 - ecpC BNILDI_00110 0.10 +0.6 28,777 + ecpC BNILDI_00110 0.18 -2.1 28,842 + ecpC BNILDI_00110 0.21 -0.6 28,842 + ecpC BNILDI_00110 0.21 +0.1 28,844 + ecpC BNILDI_00110 0.21 -1.1 28,845 - ecpC BNILDI_00110 0.21 -0.9 28,845 - ecpC BNILDI_00110 0.21 -0.2 28,857 + ecpC BNILDI_00110 0.21 +0.6 28,859 + ecpC BNILDI_00110 0.21 -0.2 28,899 + ecpC BNILDI_00110 0.23 -0.1 28,900 - ecpC BNILDI_00110 0.23 +0.3 28,998 + ecpC BNILDI_00110 0.27 -0.9 29,001 - ecpC BNILDI_00110 0.27 +1.9 29,010 + ecpC BNILDI_00110 0.27 -0.9 29,010 + ecpC BNILDI_00110 0.27 -0.1 29,209 + ecpC BNILDI_00110 0.35 +0.1 29,209 + ecpC BNILDI_00110 0.35 +0.6
Or see this region's nucleotide sequence