Experiment: amylopectin from maize (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS02115 and ABI39_RS02120 are separated by 101 nucleotides ABI39_RS02120 and ABI39_RS02125 are separated by 286 nucleotides ABI39_RS02125 and ABI39_RS02130 are separated by 64 nucleotides
ABI39_RS02115: ABI39_RS02115 - response regulator, at 620,039 to 622,606
_RS02115
ABI39_RS02120: ABI39_RS02120 - sigma-54-dependent Fis family transcriptional regulator, at 622,708 to 624,090
_RS02120
ABI39_RS02125: ABI39_RS02125 - hypothetical protein, at 624,377 to 624,682
_RS02125
ABI39_RS02130: ABI39_RS02130 - RNA pseudouridine synthase, at 624,747 to 625,418
_RS02130
Position (kb) 622
623
624
625 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 621.865 kb on - strand, within ABI39_RS02115 at 621.981 kb on + strand, within ABI39_RS02115 at 622.410 kb on + strand at 622.634 kb on + strand at 622.727 kb on + strand at 622.730 kb on + strand at 622.754 kb on - strand at 622.924 kb on + strand, within ABI39_RS02120 at 622.976 kb on + strand, within ABI39_RS02120 at 622.985 kb on + strand, within ABI39_RS02120 at 622.986 kb on - strand, within ABI39_RS02120 at 623.207 kb on - strand, within ABI39_RS02120 at 623.213 kb on - strand, within ABI39_RS02120 at 623.274 kb on + strand, within ABI39_RS02120 at 623.282 kb on - strand, within ABI39_RS02120 at 623.296 kb on - strand, within ABI39_RS02120 at 623.339 kb on + strand, within ABI39_RS02120 at 623.486 kb on + strand, within ABI39_RS02120 at 623.505 kb on - strand, within ABI39_RS02120 at 623.505 kb on - strand, within ABI39_RS02120 at 623.571 kb on - strand, within ABI39_RS02120 at 623.655 kb on + strand, within ABI39_RS02120 at 623.676 kb on + strand, within ABI39_RS02120 at 623.687 kb on + strand, within ABI39_RS02120 at 623.768 kb on + strand, within ABI39_RS02120 at 623.881 kb on - strand, within ABI39_RS02120 at 623.979 kb on + strand at 624.059 kb on - strand at 624.109 kb on - strand at 624.165 kb on - strand at 624.166 kb on + strand at 624.167 kb on - strand at 624.167 kb on - strand at 624.281 kb on - strand at 624.329 kb on - strand at 624.353 kb on + strand at 624.362 kb on + strand at 624.473 kb on - strand, within ABI39_RS02125 at 624.838 kb on - strand, within ABI39_RS02130 at 625.023 kb on + strand, within ABI39_RS02130 at 625.044 kb on + strand, within ABI39_RS02130 at 625.063 kb on + strand, within ABI39_RS02130 at 625.063 kb on + strand, within ABI39_RS02130 at 625.070 kb on + strand, within ABI39_RS02130 at 625.070 kb on + strand, within ABI39_RS02130
Per-strain Table
Position Strand Gene LocusTag Fraction amylopectin from maize (C) remove 621,865 - ABI39_RS02115 0.71 +1.5 621,981 + ABI39_RS02115 0.76 +4.1 622,410 + +3.2 622,634 + +3.5 622,727 + +0.1 622,730 + +0.2 622,754 - +0.8 622,924 + ABI39_RS02120 0.16 +0.5 622,976 + ABI39_RS02120 0.19 +1.0 622,985 + ABI39_RS02120 0.20 +0.1 622,986 - ABI39_RS02120 0.20 +1.3 623,207 - ABI39_RS02120 0.36 -2.3 623,213 - ABI39_RS02120 0.37 +0.6 623,274 + ABI39_RS02120 0.41 +1.6 623,282 - ABI39_RS02120 0.42 -0.6 623,296 - ABI39_RS02120 0.43 +0.6 623,339 + ABI39_RS02120 0.46 -1.3 623,486 + ABI39_RS02120 0.56 +0.5 623,505 - ABI39_RS02120 0.58 -1.9 623,505 - ABI39_RS02120 0.58 -0.6 623,571 - ABI39_RS02120 0.62 -0.8 623,655 + ABI39_RS02120 0.68 -0.1 623,676 + ABI39_RS02120 0.70 +0.2 623,687 + ABI39_RS02120 0.71 +0.8 623,768 + ABI39_RS02120 0.77 +1.2 623,881 - ABI39_RS02120 0.85 -0.0 623,979 + +0.2 624,059 - +0.0 624,109 - -0.9 624,165 - -0.6 624,166 + -1.5 624,167 - +1.3 624,167 - +0.8 624,281 - +0.2 624,329 - -0.7 624,353 + -0.6 624,362 + +0.3 624,473 - ABI39_RS02125 0.31 +1.3 624,838 - ABI39_RS02130 0.14 +0.6 625,023 + ABI39_RS02130 0.41 -1.8 625,044 + ABI39_RS02130 0.44 +0.2 625,063 + ABI39_RS02130 0.47 -0.0 625,063 + ABI39_RS02130 0.47 -0.7 625,070 + ABI39_RS02130 0.48 +1.2 625,070 + ABI39_RS02130 0.48 +3.7
Or see this region's nucleotide sequence