Strain Fitness in Escherichia coli ECOR38 around HEPCGN_23980

Experiment: K20

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	K20
3,581,173	-	lpoB	HEPCGN_23970	0.81	+0.2
3,581,255	+				+0.5
3,581,474	+	thiK	HEPCGN_23975	0.24	-0.5
3,581,475	-	thiK	HEPCGN_23975	0.25	+0.0
3,581,513	+	thiK	HEPCGN_23975	0.29	+0.3
3,581,513	+	thiK	HEPCGN_23975	0.29	-0.8
3,581,514	-	thiK	HEPCGN_23975	0.29	-0.9
3,581,515	+	thiK	HEPCGN_23975	0.29	+0.5
3,581,567	-	thiK	HEPCGN_23975	0.36	+0.2
3,581,603	-	thiK	HEPCGN_23975	0.40	+0.3
3,581,605	+	thiK	HEPCGN_23975	0.40	-0.2
3,581,605	+	thiK	HEPCGN_23975	0.40	-0.7
3,581,639	+	thiK	HEPCGN_23975	0.44	-0.2
3,581,759	+	thiK	HEPCGN_23975	0.59	-1.0
3,581,760	-	thiK	HEPCGN_23975	0.59	+1.0
3,581,773	-	thiK	HEPCGN_23975	0.61	-0.6
3,581,836	+	thiK	HEPCGN_23975	0.68	-0.0
3,581,920	+	thiK	HEPCGN_23975	0.79	+0.4
3,581,920	+	thiK	HEPCGN_23975	0.79	-1.3
3,581,955	-	thiK	HEPCGN_23975	0.83	+0.6
3,582,017	-				+0.8
3,582,080	+				-0.5
3,582,081	-				+0.4
3,582,081	-				-0.7
3,582,095	-				-1.2
3,582,213	-	nagZ	HEPCGN_23980	0.10	-0.4
3,582,213	-	nagZ	HEPCGN_23980	0.10	+0.7
3,582,232	-	nagZ	HEPCGN_23980	0.12	-2.7
3,582,436	+	nagZ	HEPCGN_23980	0.32	+0.5
3,582,436	+	nagZ	HEPCGN_23980	0.32	+1.4
3,582,563	-	nagZ	HEPCGN_23980	0.44	+0.0
3,582,563	-	nagZ	HEPCGN_23980	0.44	-0.3
3,582,563	-	nagZ	HEPCGN_23980	0.44	+0.1
3,582,563	-	nagZ	HEPCGN_23980	0.44	+0.4
3,582,563	-	nagZ	HEPCGN_23980	0.44	+0.1
3,582,685	+	nagZ	HEPCGN_23980	0.56	+0.2
3,582,685	+	nagZ	HEPCGN_23980	0.56	+1.1
3,582,685	+	nagZ	HEPCGN_23980	0.56	+0.3
3,582,752	+	nagZ	HEPCGN_23980	0.63	-0.2
3,582,752	+	nagZ	HEPCGN_23980	0.63	+1.1
3,582,753	-	nagZ	HEPCGN_23980	0.63	+0.5
3,582,888	-	nagZ	HEPCGN_23980	0.76	-0.6
3,582,953	-	nagZ	HEPCGN_23980	0.82	+0.2
3,583,021	+	nagZ	HEPCGN_23980	0.89	-1.8
3,583,021	+	nagZ	HEPCGN_23980	0.89	-0.9
3,583,160	+				+0.8
3,583,161	-				-0.0
3,583,164	+				-0.2
3,583,165	-				-0.3
3,583,240	+	ycfP	HEPCGN_23985	0.16	+0.8
3,583,254	+	ycfP	HEPCGN_23985	0.18	-0.6
3,583,281	-	ycfP	HEPCGN_23985	0.23	-0.6
3,583,476	+	ycfP	HEPCGN_23985	0.59	-1.3
3,583,476	+	ycfP	HEPCGN_23985	0.59	-0.9
3,583,602	+	ycfP	HEPCGN_23985	0.82	-1.0
3,583,839	+				+0.3
3,583,839	+				+2.3
3,583,854	-				-0.2
3,583,854	-				+0.7
3,583,968	-				+0.2
3,584,054	-				-0.1
3,584,084	+				+0.8