Experiment: K20
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt livJ and panM are separated by 187 nucleotides panM and livK are separated by 423 nucleotides
HEPCGN_15550: livJ - branched chain amino acid ABC transporter substrate-binding protein LivJ, at 1,872,397 to 1,873,500
livJ
HEPCGN_15555: panM - aspartate 1-decarboxylase autocleavage activator PanM, at 1,873,688 to 1,874,071
panM
HEPCGN_15560: livK - high-affinity branched-chain amino acid ABC transporter substrate-binding protein LivK, at 1,874,495 to 1,875,604
livK
Position (kb) 1873
1874
1875 Strain fitness (log2 ratio) -1
0
1
2
3 at 1872.730 kb on + strand, within livJ at 1872.730 kb on + strand, within livJ at 1872.859 kb on - strand, within livJ at 1872.891 kb on + strand, within livJ at 1872.914 kb on - strand, within livJ at 1872.967 kb on - strand, within livJ at 1872.967 kb on - strand, within livJ at 1873.057 kb on + strand, within livJ at 1873.307 kb on - strand, within livJ at 1873.368 kb on + strand, within livJ at 1873.368 kb on + strand, within livJ at 1873.373 kb on - strand, within livJ at 1873.395 kb on + strand at 1873.395 kb on + strand at 1873.414 kb on - strand at 1873.538 kb on - strand at 1873.632 kb on - strand at 1873.953 kb on + strand, within panM at 1873.954 kb on - strand, within panM at 1874.181 kb on - strand at 1874.181 kb on - strand at 1874.193 kb on - strand at 1874.193 kb on - strand at 1874.405 kb on + strand at 1874.495 kb on - strand at 1874.558 kb on - strand at 1874.569 kb on + strand at 1874.572 kb on + strand at 1874.663 kb on - strand, within livK at 1874.709 kb on - strand, within livK at 1874.773 kb on + strand, within livK at 1874.773 kb on + strand, within livK at 1874.773 kb on + strand, within livK at 1874.777 kb on + strand, within livK at 1874.777 kb on + strand, within livK at 1874.824 kb on + strand, within livK at 1874.825 kb on - strand, within livK at 1874.828 kb on + strand, within livK at 1874.828 kb on + strand, within livK at 1874.828 kb on + strand, within livK at 1874.829 kb on - strand, within livK at 1874.842 kb on + strand, within livK at 1874.900 kb on + strand, within livK at 1874.901 kb on - strand, within livK at 1874.901 kb on - strand, within livK at 1874.901 kb on - strand, within livK at 1874.901 kb on - strand, within livK at 1874.912 kb on - strand, within livK at 1874.954 kb on + strand, within livK at 1874.955 kb on - strand, within livK
Per-strain Table
Position Strand Gene LocusTag Fraction K20 remove 1,872,730 + livJ HEPCGN_15550 0.30 +0.2 1,872,730 + livJ HEPCGN_15550 0.30 -0.6 1,872,859 - livJ HEPCGN_15550 0.42 -0.2 1,872,891 + livJ HEPCGN_15550 0.45 +1.3 1,872,914 - livJ HEPCGN_15550 0.47 -0.5 1,872,967 - livJ HEPCGN_15550 0.52 -0.9 1,872,967 - livJ HEPCGN_15550 0.52 -1.0 1,873,057 + livJ HEPCGN_15550 0.60 -1.0 1,873,307 - livJ HEPCGN_15550 0.82 +1.2 1,873,368 + livJ HEPCGN_15550 0.88 +0.1 1,873,368 + livJ HEPCGN_15550 0.88 -0.2 1,873,373 - livJ HEPCGN_15550 0.88 -0.8 1,873,395 + -0.9 1,873,395 + -0.5 1,873,414 - -0.6 1,873,538 - +0.0 1,873,632 - +0.2 1,873,953 + panM HEPCGN_15555 0.69 +0.7 1,873,954 - panM HEPCGN_15555 0.69 -0.2 1,874,181 - +0.1 1,874,181 - -1.1 1,874,193 - +1.4 1,874,193 - +0.2 1,874,405 + -0.3 1,874,495 - -0.0 1,874,558 - +0.4 1,874,569 + +0.5 1,874,572 + +1.6 1,874,663 - livK HEPCGN_15560 0.15 -1.2 1,874,709 - livK HEPCGN_15560 0.19 +0.1 1,874,773 + livK HEPCGN_15560 0.25 +2.0 1,874,773 + livK HEPCGN_15560 0.25 +0.2 1,874,773 + livK HEPCGN_15560 0.25 +0.4 1,874,777 + livK HEPCGN_15560 0.25 -0.0 1,874,777 + livK HEPCGN_15560 0.25 +0.1 1,874,824 + livK HEPCGN_15560 0.30 +0.6 1,874,825 - livK HEPCGN_15560 0.30 +0.2 1,874,828 + livK HEPCGN_15560 0.30 -0.5 1,874,828 + livK HEPCGN_15560 0.30 +0.6 1,874,828 + livK HEPCGN_15560 0.30 -0.1 1,874,829 - livK HEPCGN_15560 0.30 +0.1 1,874,842 + livK HEPCGN_15560 0.31 -0.1 1,874,900 + livK HEPCGN_15560 0.36 -0.2 1,874,901 - livK HEPCGN_15560 0.37 -0.5 1,874,901 - livK HEPCGN_15560 0.37 -0.1 1,874,901 - livK HEPCGN_15560 0.37 +0.1 1,874,901 - livK HEPCGN_15560 0.37 +3.0 1,874,912 - livK HEPCGN_15560 0.38 -0.0 1,874,954 + livK HEPCGN_15560 0.41 +0.4 1,874,955 - livK HEPCGN_15560 0.41 +0.3
Or see this region's nucleotide sequence