Experiment: K20
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt pgtC and pgtP are separated by 533 nucleotides pgtP and tnpA are separated by 291 nucleotides tnpA and tnpB overlap by 1 nucleotides
HEPCGN_10755: pgtC - phosphoglycerate transport regulator PgtC, at 895,009 to 896,091
pgtC
HEPCGN_10760: pgtP - phosphoglycerate transporter PgtP, at 896,625 to 897,989
pgtP
HEPCGN_10765: tnpA - IS66-like element accessory protein TnpA, at 898,281 to 898,931
tnpA
HEPCGN_10770: tnpB - IS66 family insertion sequence element accessory protein TnpB, at 898,931 to 899,278
tnpB
Position (kb) 896
897
898 Strain fitness (log2 ratio) -1
0
1
2 at 895.717 kb on + strand, within pgtC at 895.718 kb on - strand, within pgtC at 895.718 kb on - strand, within pgtC at 895.721 kb on - strand, within pgtC at 895.743 kb on + strand, within pgtC at 895.746 kb on + strand, within pgtC at 895.775 kb on - strand, within pgtC at 895.788 kb on - strand, within pgtC at 895.857 kb on + strand, within pgtC at 895.857 kb on + strand, within pgtC at 895.861 kb on - strand, within pgtC at 895.861 kb on - strand, within pgtC at 895.880 kb on - strand, within pgtC at 896.040 kb on + strand at 896.040 kb on + strand at 896.123 kb on - strand at 896.123 kb on - strand at 896.123 kb on - strand at 896.137 kb on - strand at 896.215 kb on + strand at 896.290 kb on + strand at 896.290 kb on + strand at 896.438 kb on + strand at 896.454 kb on + strand at 896.460 kb on + strand at 896.562 kb on + strand at 896.585 kb on - strand at 896.599 kb on + strand at 896.608 kb on - strand at 896.737 kb on - strand at 896.737 kb on - strand at 896.746 kb on - strand at 896.746 kb on - strand at 896.748 kb on + strand at 896.748 kb on + strand at 896.750 kb on + strand at 896.785 kb on - strand, within pgtP at 896.790 kb on - strand, within pgtP at 896.834 kb on + strand, within pgtP at 896.840 kb on + strand, within pgtP at 896.840 kb on + strand, within pgtP at 896.840 kb on + strand, within pgtP at 896.858 kb on + strand, within pgtP at 896.858 kb on + strand, within pgtP at 896.932 kb on + strand, within pgtP at 896.932 kb on + strand, within pgtP at 896.933 kb on - strand, within pgtP at 897.047 kb on + strand, within pgtP at 897.047 kb on + strand, within pgtP at 897.054 kb on - strand, within pgtP at 897.101 kb on + strand, within pgtP at 897.102 kb on - strand, within pgtP at 897.102 kb on - strand, within pgtP at 897.125 kb on + strand, within pgtP at 897.125 kb on + strand, within pgtP at 897.192 kb on + strand, within pgtP at 897.192 kb on + strand, within pgtP at 897.193 kb on - strand, within pgtP at 897.195 kb on - strand, within pgtP at 897.230 kb on - strand, within pgtP at 897.274 kb on + strand, within pgtP at 897.275 kb on - strand, within pgtP at 897.275 kb on - strand, within pgtP at 897.334 kb on + strand, within pgtP at 897.383 kb on - strand, within pgtP at 897.406 kb on - strand, within pgtP at 897.424 kb on + strand, within pgtP at 897.424 kb on + strand, within pgtP at 897.430 kb on + strand, within pgtP at 897.433 kb on - strand, within pgtP at 897.433 kb on - strand, within pgtP at 897.439 kb on + strand, within pgtP at 897.439 kb on + strand, within pgtP at 897.455 kb on + strand, within pgtP at 897.468 kb on - strand, within pgtP at 897.471 kb on + strand, within pgtP at 897.599 kb on + strand, within pgtP at 897.675 kb on - strand, within pgtP at 897.992 kb on - strand at 898.029 kb on - strand at 898.046 kb on - strand at 898.247 kb on + strand at 898.248 kb on - strand at 898.277 kb on + strand at 898.278 kb on - strand at 898.278 kb on - strand at 898.467 kb on + strand, within tnpA at 898.529 kb on - strand, within tnpA at 898.637 kb on - strand, within tnpA at 898.637 kb on - strand, within tnpA at 898.637 kb on - strand, within tnpA at 898.736 kb on - strand, within tnpA at 898.750 kb on + strand, within tnpA at 898.808 kb on + strand, within tnpA at 898.808 kb on + strand, within tnpA at 898.808 kb on + strand, within tnpA at 898.808 kb on + strand, within tnpA at 898.809 kb on - strand, within tnpA at 898.809 kb on - strand, within tnpA at 898.809 kb on - strand, within tnpA at 898.891 kb on + strand at 898.892 kb on - strand at 898.935 kb on + strand at 898.935 kb on + strand at 898.935 kb on + strand at 898.936 kb on - strand at 898.936 kb on - strand at 898.936 kb on - strand at 898.939 kb on + strand at 898.940 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction K20 remove 895,717 + pgtC HEPCGN_10755 0.65 +0.9 895,718 - pgtC HEPCGN_10755 0.65 +0.2 895,718 - pgtC HEPCGN_10755 0.65 +0.4 895,721 - pgtC HEPCGN_10755 0.66 +0.4 895,743 + pgtC HEPCGN_10755 0.68 -0.1 895,746 + pgtC HEPCGN_10755 0.68 +0.2 895,775 - pgtC HEPCGN_10755 0.71 +0.5 895,788 - pgtC HEPCGN_10755 0.72 -0.3 895,857 + pgtC HEPCGN_10755 0.78 +1.0 895,857 + pgtC HEPCGN_10755 0.78 -0.1 895,861 - pgtC HEPCGN_10755 0.79 +0.7 895,861 - pgtC HEPCGN_10755 0.79 +0.8 895,880 - pgtC HEPCGN_10755 0.80 -0.1 896,040 + -1.1 896,040 + +0.3 896,123 - +0.7 896,123 - -0.5 896,123 - -0.6 896,137 - -0.0 896,215 + -0.5 896,290 + +0.1 896,290 + -0.3 896,438 + -0.3 896,454 + +0.0 896,460 + +0.0 896,562 + +0.1 896,585 - +1.5 896,599 + -0.6 896,608 - +0.1 896,737 - +0.1 896,737 - -0.4 896,746 - +0.1 896,746 - +0.9 896,748 + +0.0 896,748 + -0.3 896,750 + -0.0 896,785 - pgtP HEPCGN_10760 0.12 -1.4 896,790 - pgtP HEPCGN_10760 0.12 -0.4 896,834 + pgtP HEPCGN_10760 0.15 -0.1 896,840 + pgtP HEPCGN_10760 0.16 +0.5 896,840 + pgtP HEPCGN_10760 0.16 -0.7 896,840 + pgtP HEPCGN_10760 0.16 -0.0 896,858 + pgtP HEPCGN_10760 0.17 +0.7 896,858 + pgtP HEPCGN_10760 0.17 +0.3 896,932 + pgtP HEPCGN_10760 0.22 +0.7 896,932 + pgtP HEPCGN_10760 0.22 -0.4 896,933 - pgtP HEPCGN_10760 0.23 -1.7 897,047 + pgtP HEPCGN_10760 0.31 +1.3 897,047 + pgtP HEPCGN_10760 0.31 -0.6 897,054 - pgtP HEPCGN_10760 0.31 -0.9 897,101 + pgtP HEPCGN_10760 0.35 -0.3 897,102 - pgtP HEPCGN_10760 0.35 -0.1 897,102 - pgtP HEPCGN_10760 0.35 +0.7 897,125 + pgtP HEPCGN_10760 0.37 -0.0 897,125 + pgtP HEPCGN_10760 0.37 +2.2 897,192 + pgtP HEPCGN_10760 0.42 +0.9 897,192 + pgtP HEPCGN_10760 0.42 +0.4 897,193 - pgtP HEPCGN_10760 0.42 -0.9 897,195 - pgtP HEPCGN_10760 0.42 +1.0 897,230 - pgtP HEPCGN_10760 0.44 -0.3 897,274 + pgtP HEPCGN_10760 0.48 -0.1 897,275 - pgtP HEPCGN_10760 0.48 +0.2 897,275 - pgtP HEPCGN_10760 0.48 +0.3 897,334 + pgtP HEPCGN_10760 0.52 -0.4 897,383 - pgtP HEPCGN_10760 0.56 -0.1 897,406 - pgtP HEPCGN_10760 0.57 -0.0 897,424 + pgtP HEPCGN_10760 0.59 +0.4 897,424 + pgtP HEPCGN_10760 0.59 +0.9 897,430 + pgtP HEPCGN_10760 0.59 -0.4 897,433 - pgtP HEPCGN_10760 0.59 -0.1 897,433 - pgtP HEPCGN_10760 0.59 -1.3 897,439 + pgtP HEPCGN_10760 0.60 +0.1 897,439 + pgtP HEPCGN_10760 0.60 -0.3 897,455 + pgtP HEPCGN_10760 0.61 +1.3 897,468 - pgtP HEPCGN_10760 0.62 +0.3 897,471 + pgtP HEPCGN_10760 0.62 -0.5 897,599 + pgtP HEPCGN_10760 0.71 +1.2 897,675 - pgtP HEPCGN_10760 0.77 +0.0 897,992 - +0.1 898,029 - -0.1 898,046 - +0.4 898,247 + +0.4 898,248 - -0.6 898,277 + +1.4 898,278 - +0.3 898,278 - -0.3 898,467 + tnpA HEPCGN_10765 0.29 +0.3 898,529 - tnpA HEPCGN_10765 0.38 +0.7 898,637 - tnpA HEPCGN_10765 0.55 -0.6 898,637 - tnpA HEPCGN_10765 0.55 -0.2 898,637 - tnpA HEPCGN_10765 0.55 -0.6 898,736 - tnpA HEPCGN_10765 0.70 +0.5 898,750 + tnpA HEPCGN_10765 0.72 -0.9 898,808 + tnpA HEPCGN_10765 0.81 -0.0 898,808 + tnpA HEPCGN_10765 0.81 +0.1 898,808 + tnpA HEPCGN_10765 0.81 -0.1 898,808 + tnpA HEPCGN_10765 0.81 -0.3 898,809 - tnpA HEPCGN_10765 0.81 +0.1 898,809 - tnpA HEPCGN_10765 0.81 +0.4 898,809 - tnpA HEPCGN_10765 0.81 +0.1 898,891 + +0.4 898,892 - -0.1 898,935 + -0.5 898,935 + -0.5 898,935 + +0.0 898,936 - -0.2 898,936 - -0.4 898,936 - +0.5 898,939 + +0.0 898,940 - -0.4
Or see this region's nucleotide sequence