Experiment: K20
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ushA and fsr are separated by 217 nucleotides fsr and ybaL are separated by 237 nucleotides
HEPCGN_06730: ushA - bifunctional UDP-sugar hydrolase/5'-nucleotidase, at 76,779 to 78,431
ushA
HEPCGN_06735: fsr - fosmidomycin MFS transporter, at 78,649 to 79,869
fsr
HEPCGN_06740: ybaL - Kef family K(+) transporter, at 80,107 to 81,783
ybaL
Position (kb) 78
79
80 Strain fitness (log2 ratio) -1
0
1
2 at 77.780 kb on + strand, within ushA at 77.799 kb on - strand, within ushA at 77.909 kb on + strand, within ushA at 77.910 kb on - strand, within ushA at 78.008 kb on + strand, within ushA at 78.055 kb on - strand, within ushA at 78.150 kb on + strand, within ushA at 78.177 kb on - strand, within ushA at 78.195 kb on + strand, within ushA at 78.281 kb on - strand at 78.344 kb on + strand at 78.432 kb on - strand at 78.469 kb on + strand at 78.472 kb on + strand at 78.473 kb on - strand at 78.473 kb on - strand at 78.487 kb on + strand at 78.488 kb on - strand at 78.530 kb on - strand at 78.579 kb on + strand at 78.580 kb on - strand at 78.580 kb on - strand at 78.580 kb on - strand at 78.580 kb on - strand at 78.585 kb on - strand at 78.605 kb on + strand at 78.605 kb on + strand at 78.606 kb on - strand at 78.619 kb on - strand at 78.728 kb on + strand at 78.735 kb on + strand at 78.735 kb on + strand at 78.825 kb on + strand, within fsr at 78.843 kb on - strand, within fsr at 78.903 kb on + strand, within fsr at 78.950 kb on + strand, within fsr at 79.393 kb on + strand, within fsr at 79.393 kb on + strand, within fsr at 79.393 kb on + strand, within fsr at 79.394 kb on - strand, within fsr at 79.397 kb on - strand, within fsr at 79.397 kb on - strand, within fsr at 79.620 kb on + strand, within fsr at 79.820 kb on + strand at 80.008 kb on - strand at 80.014 kb on - strand at 80.043 kb on - strand at 80.046 kb on - strand at 80.128 kb on - strand at 80.193 kb on + strand at 80.194 kb on - strand at 80.394 kb on - strand, within ybaL at 80.472 kb on - strand, within ybaL at 80.472 kb on - strand, within ybaL at 80.472 kb on - strand, within ybaL at 80.528 kb on + strand, within ybaL at 80.529 kb on - strand, within ybaL at 80.532 kb on - strand, within ybaL at 80.586 kb on - strand, within ybaL at 80.586 kb on - strand, within ybaL at 80.712 kb on + strand, within ybaL at 80.723 kb on + strand, within ybaL at 80.724 kb on - strand, within ybaL at 80.758 kb on - strand, within ybaL at 80.787 kb on + strand, within ybaL
Per-strain Table
Position Strand Gene LocusTag Fraction K20 remove 77,780 + ushA HEPCGN_06730 0.61 +0.3 77,799 - ushA HEPCGN_06730 0.62 -0.0 77,909 + ushA HEPCGN_06730 0.68 +1.1 77,910 - ushA HEPCGN_06730 0.68 +0.2 78,008 + ushA HEPCGN_06730 0.74 +0.5 78,055 - ushA HEPCGN_06730 0.77 +0.1 78,150 + ushA HEPCGN_06730 0.83 -0.1 78,177 - ushA HEPCGN_06730 0.85 -1.3 78,195 + ushA HEPCGN_06730 0.86 -1.0 78,281 - +0.2 78,344 + -0.9 78,432 - +1.1 78,469 + +1.6 78,472 + +0.2 78,473 - +0.3 78,473 - +0.6 78,487 + -0.7 78,488 - +0.3 78,530 - +0.5 78,579 + +0.8 78,580 - +0.2 78,580 - -0.8 78,580 - -0.4 78,580 - +0.9 78,585 - +0.1 78,605 + +1.1 78,605 + -0.1 78,606 - +0.0 78,619 - +0.4 78,728 + +1.0 78,735 + -0.5 78,735 + +0.5 78,825 + fsr HEPCGN_06735 0.14 +0.4 78,843 - fsr HEPCGN_06735 0.16 +0.3 78,903 + fsr HEPCGN_06735 0.21 +0.9 78,950 + fsr HEPCGN_06735 0.25 -0.1 79,393 + fsr HEPCGN_06735 0.61 +2.5 79,393 + fsr HEPCGN_06735 0.61 +0.1 79,393 + fsr HEPCGN_06735 0.61 -0.2 79,394 - fsr HEPCGN_06735 0.61 -0.1 79,397 - fsr HEPCGN_06735 0.61 -0.9 79,397 - fsr HEPCGN_06735 0.61 +0.1 79,620 + fsr HEPCGN_06735 0.80 +0.3 79,820 + +0.9 80,008 - -0.2 80,014 - +0.6 80,043 - -0.1 80,046 - +0.5 80,128 - +0.4 80,193 + -1.2 80,194 - +0.8 80,394 - ybaL HEPCGN_06740 0.17 -0.0 80,472 - ybaL HEPCGN_06740 0.22 +1.9 80,472 - ybaL HEPCGN_06740 0.22 +0.2 80,472 - ybaL HEPCGN_06740 0.22 +0.3 80,528 + ybaL HEPCGN_06740 0.25 +1.2 80,529 - ybaL HEPCGN_06740 0.25 -0.8 80,532 - ybaL HEPCGN_06740 0.25 -0.6 80,586 - ybaL HEPCGN_06740 0.29 +0.5 80,586 - ybaL HEPCGN_06740 0.29 -0.1 80,712 + ybaL HEPCGN_06740 0.36 -0.2 80,723 + ybaL HEPCGN_06740 0.37 +0.2 80,724 - ybaL HEPCGN_06740 0.37 +0.3 80,758 - ybaL HEPCGN_06740 0.39 -0.0 80,787 + ybaL HEPCGN_06740 0.41 -0.5
Or see this region's nucleotide sequence