Strain Fitness in Escherichia coli ECOR38 around HEPCGN_06440

Experiment: K20

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntsfmD and fimC are separated by 30 nucleotidesfimC and fimA are separated by 218 nucleotidesfimA and HEPCGN_06445 are separated by 471 nucleotides HEPCGN_06430: sfmD - Outer membrane usher protein SfmD, at 2,549 to 5,158 sfmD HEPCGN_06435: fimC - type 1 fimbria chaperone FimC, at 5,189 to 5,881 fimC HEPCGN_06440: fimA - type 1 fimbrial major subunit FimA, at 6,100 to 6,642 fimA HEPCGN_06445: HEPCGN_06445 - Bifunctional protein FolD, at 7,114 to 7,980 _06445 Position (kb) 6 7Strain fitness (log2 ratio) -1 0 1at 5.391 kb on + strand, within fimCat 5.735 kb on - strand, within fimCat 5.741 kb on - strand, within fimCat 6.172 kb on - strand, within fimAat 6.235 kb on - strand, within fimAat 6.274 kb on + strand, within fimAat 6.310 kb on - strand, within fimAat 6.569 kb on - strand, within fimAat 6.582 kb on - strand, within fimAat 6.716 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction K20
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5,391 + fimC HEPCGN_06435 0.29 +0.4
5,735 - fimC HEPCGN_06435 0.79 -1.6
5,741 - fimC HEPCGN_06435 0.80 +0.9
6,172 - fimA HEPCGN_06440 0.13 +0.9
6,235 - fimA HEPCGN_06440 0.25 -1.4
6,274 + fimA HEPCGN_06440 0.32 +0.5
6,310 - fimA HEPCGN_06440 0.39 -0.2
6,569 - fimA HEPCGN_06440 0.86 -0.2
6,582 - fimA HEPCGN_06440 0.89 -1.0
6,716 + -0.1

Or see this region's nucleotide sequence