Strain Fitness in Escherichia coli ECOR38 around HEPCGN_04055

Experiment: K20

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfliK and fliJ overlap by 4 nucleotidesfliJ and fliI are separated by 18 nucleotides HEPCGN_04050: fliK - flagellar hook length control protein FliK, at 709,840 to 710,967 fliK HEPCGN_04055: fliJ - flagella biosynthesis chaperone FliJ, at 710,964 to 711,407 fliJ HEPCGN_04060: fliI - flagellum-specific ATP synthase FliI, at 711,426 to 712,799 fliI Position (kb) 710 711 712Strain fitness (log2 ratio) -1 0 1at 710.130 kb on + strand, within fliKat 710.130 kb on + strand, within fliKat 710.452 kb on - strand, within fliKat 710.598 kb on + strand, within fliKat 711.355 kb on - strand, within fliJat 711.355 kb on - strand, within fliJat 711.447 kb on - strandat 711.509 kb on - strandat 711.509 kb on - strandat 711.509 kb on - strandat 711.572 kb on - strand, within fliIat 711.855 kb on - strand, within fliIat 711.917 kb on + strand, within fliIat 712.153 kb on - strand, within fliIat 712.268 kb on + strand, within fliIat 712.344 kb on - strand, within fliI

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Per-strain Table

Position Strand Gene LocusTag Fraction K20
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710,130 + fliK HEPCGN_04050 0.26 -0.5
710,130 + fliK HEPCGN_04050 0.26 -0.5
710,452 - fliK HEPCGN_04050 0.54 -1.0
710,598 + fliK HEPCGN_04050 0.67 -0.5
711,355 - fliJ HEPCGN_04055 0.88 +0.1
711,355 - fliJ HEPCGN_04055 0.88 +0.0
711,447 - +0.1
711,509 - -0.7
711,509 - -0.2
711,509 - -0.5
711,572 - fliI HEPCGN_04060 0.11 -0.1
711,855 - fliI HEPCGN_04060 0.31 +0.7
711,917 + fliI HEPCGN_04060 0.36 -0.5
712,153 - fliI HEPCGN_04060 0.53 +1.2
712,268 + fliI HEPCGN_04060 0.61 +0.2
712,344 - fliI HEPCGN_04060 0.67 -1.0

Or see this region's nucleotide sequence