Experiment: K20
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tnp-IS3 and HEPCGN_03380 are separated by 89 nucleotides HEPCGN_03380 and tnp-IS600 are separated by 27 nucleotides tnp-IS600 and tnp-ISSd1 are separated by 35 nucleotides tnp-ISSd1 and HEPCGN_03395 are separated by 56 nucleotides HEPCGN_03395 and ydcZ are separated by 2 nucleotides
HEPCGN_03370: tnp-IS3 - IS3 family transposase, at 580,495 to 580,806
tnp-IS3
HEPCGN_03380: HEPCGN_03380 - Phosphotriesterase-related protein, at 580,896 to 581,693
_03380
HEPCGN_03385: tnp-IS600 - IS3 family IS600 transposase, at 581,721 to 582,539
tnp-IS600
HEPCGN_03390: tnp-ISSd1 - IS3 family ISSd1 transposase, at 582,575 to 582,877
tnp-ISSd1
HEPCGN_03395: HEPCGN_03395 - Phosphotriesterase, at 582,934 to 583,197
_03395
HEPCGN_03400: ydcZ - Putative inner membrane exporter, YdcZ, at 583,200 to 584,165
ydcZ
Position (kb) 581
582
583 Strain fitness (log2 ratio) -2
-1
0
1 at 580.909 kb on - strand at 580.975 kb on + strand at 581.039 kb on + strand, within HEPCGN_03380 at 581.153 kb on + strand, within HEPCGN_03380 at 581.153 kb on + strand, within HEPCGN_03380 at 581.154 kb on - strand, within HEPCGN_03380 at 581.196 kb on - strand, within HEPCGN_03380 at 581.261 kb on + strand, within HEPCGN_03380 at 581.262 kb on - strand, within HEPCGN_03380 at 581.262 kb on - strand, within HEPCGN_03380 at 581.286 kb on + strand, within HEPCGN_03380 at 581.286 kb on + strand, within HEPCGN_03380 at 581.339 kb on + strand, within HEPCGN_03380 at 581.339 kb on + strand, within HEPCGN_03380 at 581.340 kb on - strand, within HEPCGN_03380 at 581.397 kb on - strand, within HEPCGN_03380 at 581.431 kb on - strand, within HEPCGN_03380 at 581.522 kb on + strand, within HEPCGN_03380 at 581.592 kb on + strand, within HEPCGN_03380 at 582.978 kb on + strand, within HEPCGN_03395 at 583.083 kb on - strand, within HEPCGN_03395 at 583.149 kb on + strand, within HEPCGN_03395 at 583.203 kb on + strand at 583.204 kb on - strand at 583.248 kb on - strand at 583.303 kb on + strand, within ydcZ at 583.330 kb on - strand, within ydcZ at 583.393 kb on - strand, within ydcZ at 583.437 kb on + strand, within ydcZ at 583.437 kb on + strand, within ydcZ at 583.438 kb on - strand, within ydcZ at 583.479 kb on + strand, within ydcZ at 583.501 kb on - strand, within ydcZ at 583.514 kb on + strand, within ydcZ at 583.514 kb on + strand, within ydcZ at 583.518 kb on + strand, within ydcZ at 583.531 kb on - strand, within ydcZ
Per-strain Table
Position Strand Gene LocusTag Fraction K20 remove 580,909 - +0.1 580,975 + +1.1 581,039 + HEPCGN_03380 0.18 +0.3 581,153 + HEPCGN_03380 0.32 -0.7 581,153 + HEPCGN_03380 0.32 -1.6 581,154 - HEPCGN_03380 0.32 +0.0 581,196 - HEPCGN_03380 0.38 +0.1 581,261 + HEPCGN_03380 0.46 +1.5 581,262 - HEPCGN_03380 0.46 +0.2 581,262 - HEPCGN_03380 0.46 -0.2 581,286 + HEPCGN_03380 0.49 +0.9 581,286 + HEPCGN_03380 0.49 -0.1 581,339 + HEPCGN_03380 0.56 -0.3 581,339 + HEPCGN_03380 0.56 +0.1 581,340 - HEPCGN_03380 0.56 -1.0 581,397 - HEPCGN_03380 0.63 -0.1 581,431 - HEPCGN_03380 0.67 -0.5 581,522 + HEPCGN_03380 0.78 -1.6 581,592 + HEPCGN_03380 0.87 -0.1 582,978 + HEPCGN_03395 0.17 +0.9 583,083 - HEPCGN_03395 0.56 -1.0 583,149 + HEPCGN_03395 0.81 +0.8 583,203 + +0.9 583,204 - +0.2 583,248 - -0.2 583,303 + ydcZ HEPCGN_03400 0.11 -1.1 583,330 - ydcZ HEPCGN_03400 0.13 -1.8 583,393 - ydcZ HEPCGN_03400 0.20 -0.5 583,437 + ydcZ HEPCGN_03400 0.25 -1.5 583,437 + ydcZ HEPCGN_03400 0.25 -0.2 583,438 - ydcZ HEPCGN_03400 0.25 -1.6 583,479 + ydcZ HEPCGN_03400 0.29 -1.2 583,501 - ydcZ HEPCGN_03400 0.31 +1.3 583,514 + ydcZ HEPCGN_03400 0.33 -0.0 583,514 + ydcZ HEPCGN_03400 0.33 +1.4 583,518 + ydcZ HEPCGN_03400 0.33 +0.4 583,531 - ydcZ HEPCGN_03400 0.34 -0.1
Or see this region's nucleotide sequence