Experiment: K20
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ybfA and ybgA are separated by 100 nucleotides ybgA and phrB overlap by 4 nucleotides phrB and dtpD are separated by 42 nucleotides
HEPCGN_01180: ybfA - Uncharacterized protein YbfA, at 163,703 to 163,909
ybfA
HEPCGN_01185: ybgA - DUF1722 domain-containing protein, at 164,010 to 164,519
ybgA
HEPCGN_01190: phrB - deoxyribodipyrimidine photo-lyase, at 164,516 to 165,934
phrB
HEPCGN_01195: dtpD - dipeptide permease DtpD, at 165,977 to 167,458
dtpD
Position (kb) 164
165
166 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 163.569 kb on - strand at 163.579 kb on + strand at 163.631 kb on + strand at 163.632 kb on - strand at 163.702 kb on + strand at 163.755 kb on - strand, within ybfA at 163.826 kb on + strand, within ybfA at 163.915 kb on - strand at 163.921 kb on + strand at 163.977 kb on - strand at 163.983 kb on - strand at 164.008 kb on + strand at 164.069 kb on - strand, within ybgA at 164.129 kb on + strand, within ybgA at 164.221 kb on - strand, within ybgA at 164.224 kb on - strand, within ybgA at 164.224 kb on - strand, within ybgA at 164.285 kb on + strand, within ybgA at 164.286 kb on - strand, within ybgA at 164.314 kb on - strand, within ybgA at 164.414 kb on + strand, within ybgA at 164.424 kb on + strand, within ybgA at 164.424 kb on + strand, within ybgA at 164.425 kb on - strand, within ybgA at 164.426 kb on + strand, within ybgA at 164.436 kb on + strand, within ybgA at 164.492 kb on + strand at 164.492 kb on + strand at 164.493 kb on - strand at 164.493 kb on - strand at 164.515 kb on + strand at 164.515 kb on + strand at 164.516 kb on - strand at 164.551 kb on - strand at 164.619 kb on - strand at 164.619 kb on - strand at 164.619 kb on - strand at 164.619 kb on - strand at 164.619 kb on - strand at 164.650 kb on + strand at 164.653 kb on + strand at 164.776 kb on - strand, within phrB at 164.779 kb on + strand, within phrB at 164.819 kb on + strand, within phrB at 164.820 kb on - strand, within phrB at 164.822 kb on - strand, within phrB at 164.825 kb on + strand, within phrB at 164.825 kb on + strand, within phrB at 164.831 kb on + strand, within phrB at 164.957 kb on + strand, within phrB at 164.957 kb on + strand, within phrB at 164.957 kb on + strand, within phrB at 164.958 kb on - strand, within phrB at 164.969 kb on - strand, within phrB at 164.977 kb on + strand, within phrB at 165.039 kb on + strand, within phrB at 165.039 kb on + strand, within phrB at 165.043 kb on + strand, within phrB at 165.043 kb on + strand, within phrB at 165.044 kb on - strand, within phrB at 165.058 kb on - strand, within phrB at 165.086 kb on + strand, within phrB at 165.183 kb on - strand, within phrB at 165.378 kb on - strand, within phrB at 165.378 kb on - strand, within phrB at 165.378 kb on - strand, within phrB at 165.458 kb on - strand, within phrB at 165.556 kb on + strand, within phrB at 165.557 kb on - strand, within phrB at 165.582 kb on + strand, within phrB at 165.710 kb on - strand, within phrB at 165.854 kb on + strand at 166.093 kb on + strand at 166.093 kb on + strand at 166.094 kb on - strand at 166.094 kb on - strand at 166.095 kb on + strand at 166.096 kb on - strand at 166.111 kb on - strand at 166.177 kb on - strand, within dtpD at 166.207 kb on - strand, within dtpD at 166.207 kb on - strand, within dtpD at 166.264 kb on + strand, within dtpD at 166.265 kb on - strand, within dtpD at 166.265 kb on - strand, within dtpD at 166.265 kb on - strand, within dtpD at 166.344 kb on + strand, within dtpD at 166.345 kb on - strand, within dtpD at 166.496 kb on - strand, within dtpD at 166.525 kb on + strand, within dtpD at 166.526 kb on - strand, within dtpD at 166.542 kb on + strand, within dtpD at 166.542 kb on + strand, within dtpD at 166.578 kb on + strand, within dtpD at 166.578 kb on + strand, within dtpD at 166.710 kb on - strand, within dtpD at 166.727 kb on - strand, within dtpD at 166.727 kb on - strand, within dtpD at 166.727 kb on - strand, within dtpD at 166.727 kb on - strand, within dtpD at 166.746 kb on + strand, within dtpD
Per-strain Table
Position Strand Gene LocusTag Fraction K20 remove 163,569 - +0.1 163,579 + -0.9 163,631 + +0.2 163,632 - +1.4 163,702 + +0.4 163,755 - ybfA HEPCGN_01180 0.25 -0.6 163,826 + ybfA HEPCGN_01180 0.59 +0.5 163,915 - -0.6 163,921 + -1.1 163,977 - -0.3 163,983 - -0.2 164,008 + +0.1 164,069 - ybgA HEPCGN_01185 0.12 +0.0 164,129 + ybgA HEPCGN_01185 0.23 +0.8 164,221 - ybgA HEPCGN_01185 0.41 -0.1 164,224 - ybgA HEPCGN_01185 0.42 +0.2 164,224 - ybgA HEPCGN_01185 0.42 -0.5 164,285 + ybgA HEPCGN_01185 0.54 +1.0 164,286 - ybgA HEPCGN_01185 0.54 +0.5 164,314 - ybgA HEPCGN_01185 0.60 -1.1 164,414 + ybgA HEPCGN_01185 0.79 +0.9 164,424 + ybgA HEPCGN_01185 0.81 -0.3 164,424 + ybgA HEPCGN_01185 0.81 -0.1 164,425 - ybgA HEPCGN_01185 0.81 -2.8 164,426 + ybgA HEPCGN_01185 0.82 -1.0 164,436 + ybgA HEPCGN_01185 0.84 +0.5 164,492 + +0.2 164,492 + -0.8 164,493 - +0.2 164,493 - -0.3 164,515 + -0.1 164,515 + -0.1 164,516 - +0.1 164,551 - +0.9 164,619 - -1.1 164,619 - +0.9 164,619 - -0.1 164,619 - -0.5 164,619 - -0.7 164,650 + -1.1 164,653 + +0.3 164,776 - phrB HEPCGN_01190 0.18 -1.6 164,779 + phrB HEPCGN_01190 0.19 -0.2 164,819 + phrB HEPCGN_01190 0.21 +0.3 164,820 - phrB HEPCGN_01190 0.21 -0.3 164,822 - phrB HEPCGN_01190 0.22 -0.4 164,825 + phrB HEPCGN_01190 0.22 -0.3 164,825 + phrB HEPCGN_01190 0.22 +0.9 164,831 + phrB HEPCGN_01190 0.22 +2.1 164,957 + phrB HEPCGN_01190 0.31 -1.2 164,957 + phrB HEPCGN_01190 0.31 +0.1 164,957 + phrB HEPCGN_01190 0.31 -1.6 164,958 - phrB HEPCGN_01190 0.31 +0.7 164,969 - phrB HEPCGN_01190 0.32 -0.5 164,977 + phrB HEPCGN_01190 0.32 -0.1 165,039 + phrB HEPCGN_01190 0.37 -0.3 165,039 + phrB HEPCGN_01190 0.37 -0.2 165,043 + phrB HEPCGN_01190 0.37 -1.2 165,043 + phrB HEPCGN_01190 0.37 +0.3 165,044 - phrB HEPCGN_01190 0.37 -0.1 165,058 - phrB HEPCGN_01190 0.38 +0.0 165,086 + phrB HEPCGN_01190 0.40 -0.9 165,183 - phrB HEPCGN_01190 0.47 +0.7 165,378 - phrB HEPCGN_01190 0.61 +0.0 165,378 - phrB HEPCGN_01190 0.61 -0.3 165,378 - phrB HEPCGN_01190 0.61 +1.1 165,458 - phrB HEPCGN_01190 0.66 +0.0 165,556 + phrB HEPCGN_01190 0.73 -0.3 165,557 - phrB HEPCGN_01190 0.73 +0.2 165,582 + phrB HEPCGN_01190 0.75 -0.7 165,710 - phrB HEPCGN_01190 0.84 -1.3 165,854 + -0.4 166,093 + -1.5 166,093 + -0.7 166,094 - -0.1 166,094 - -0.0 166,095 + +0.3 166,096 - -0.2 166,111 - -0.6 166,177 - dtpD HEPCGN_01195 0.13 +0.5 166,207 - dtpD HEPCGN_01195 0.16 +0.2 166,207 - dtpD HEPCGN_01195 0.16 -0.1 166,264 + dtpD HEPCGN_01195 0.19 -0.0 166,265 - dtpD HEPCGN_01195 0.19 -0.1 166,265 - dtpD HEPCGN_01195 0.19 -0.4 166,265 - dtpD HEPCGN_01195 0.19 -1.3 166,344 + dtpD HEPCGN_01195 0.25 +0.0 166,345 - dtpD HEPCGN_01195 0.25 +0.7 166,496 - dtpD HEPCGN_01195 0.35 +1.1 166,525 + dtpD HEPCGN_01195 0.37 -0.4 166,526 - dtpD HEPCGN_01195 0.37 +0.2 166,542 + dtpD HEPCGN_01195 0.38 -0.3 166,542 + dtpD HEPCGN_01195 0.38 -1.0 166,578 + dtpD HEPCGN_01195 0.41 -1.1 166,578 + dtpD HEPCGN_01195 0.41 +0.0 166,710 - dtpD HEPCGN_01195 0.49 +0.6 166,727 - dtpD HEPCGN_01195 0.51 +0.6 166,727 - dtpD HEPCGN_01195 0.51 -0.7 166,727 - dtpD HEPCGN_01195 0.51 -1.1 166,727 - dtpD HEPCGN_01195 0.51 -0.4 166,746 + dtpD HEPCGN_01195 0.52 -2.1
Or see this region's nucleotide sequence