Strain Fitness in Variovorax sp. SCN45 around GFF793

Experiment: M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
84,846	-		GFF792	0.35	-1.2
84,846	-		GFF792	0.35	-0.1
85,039	+		GFF792	0.54	-0.1
85,040	-		GFF792	0.54	-0.1
85,040	-		GFF792	0.54	-1.2
85,040	-		GFF792	0.54	+1.1
85,040	-		GFF792	0.54	+0.8
85,220	+		GFF792	0.72	+0.7
85,220	+		GFF792	0.72	-0.1
85,221	-		GFF792	0.72	+0.1
85,221	-		GFF792	0.72	+0.5
85,221	-		GFF792	0.72	+0.1
85,454	+				+0.5
85,454	+				-0.1
85,454	+				-0.2
85,454	+				+0.1
85,454	+				-0.4
85,455	-				-0.7
85,455	-				-0.6
85,455	-				+0.4
85,498	+				-2.2
85,498	+				-0.3
85,498	+				-1.2
85,498	+				-0.4
85,499	-				-0.0
85,499	-				-0.5
85,499	-				-0.9
85,499	-				+0.7
85,499	-				-0.6
85,499	-				+0.4
85,499	-				+0.3
85,630	+				-0.7
85,631	-				+0.9
86,447	+				-0.0
86,447	+				-2.2
86,447	+				-1.9
86,448	-				+0.1
86,558	+				-1.2
86,559	-				-0.7
86,559	-				-0.3
86,559	-				-0.0
86,559	-				+2.4
87,347	+		GFF793	0.13	-1.6
87,366	-		GFF793	0.13	+0.5
87,366	-		GFF793	0.13	-0.5
87,399	-		GFF793	0.14	+0.7
87,493	+		GFF793	0.14	-0.2
87,493	+		GFF793	0.14	-0.0
87,493	+		GFF793	0.14	-0.5
87,578	+		GFF793	0.15	-0.3
87,579	-		GFF793	0.15	+0.1
87,579	-		GFF793	0.15	+0.7
87,579	-		GFF793	0.15	-2.1
87,611	+		GFF793	0.15	-0.2
87,611	+		GFF793	0.15	-0.9
87,611	+		GFF793	0.15	+0.8
87,611	+		GFF793	0.15	-0.3
87,612	-		GFF793	0.15	-1.9
87,612	-		GFF793	0.15	-1.6
87,612	-		GFF793	0.15	+0.1
87,623	+		GFF793	0.15	+0.1
87,623	+		GFF793	0.15	+1.1
87,623	+		GFF793	0.15	-0.2
87,623	+		GFF793	0.15	-0.2
87,624	-		GFF793	0.15	+0.8
87,624	-		GFF793	0.15	+0.3
87,624	-		GFF793	0.15	-0.5
87,680	+		GFF793	0.16	-0.6
87,680	+		GFF793	0.16	-1.4
87,681	-		GFF793	0.16	-0.3
87,681	-		GFF793	0.16	-1.6
87,722	+		GFF793	0.16	-0.8
87,905	+		GFF793	0.18	-0.2
87,905	+		GFF793	0.18	-0.7
87,905	+		GFF793	0.18	-0.0
87,906	-		GFF793	0.18	+0.0
87,906	-		GFF793	0.18	-1.0
87,906	-		GFF793	0.18	+0.2
87,906	-		GFF793	0.18	-0.6
87,914	+		GFF793	0.18	-0.2
87,915	-		GFF793	0.18	-1.9
87,941	+		GFF793	0.18	-0.1
88,058	+		GFF793	0.19	-0.1
88,059	-		GFF793	0.19	-1.4
88,265	+		GFF793	0.20	-0.2
88,265	+		GFF793	0.20	-0.1
88,265	+		GFF793	0.20	-0.4
88,266	-		GFF793	0.20	-0.7
88,266	-		GFF793	0.20	+0.3
88,266	-		GFF793	0.20	+0.2
88,266	-		GFF793	0.20	-0.3
88,266	-		GFF793	0.20	+0.2
88,283	+		GFF793	0.21	+0.9
88,283	+		GFF793	0.21	-0.6
88,283	+		GFF793	0.21	+0.0
88,283	+		GFF793	0.21	+0.2
88,283	+		GFF793	0.21	+0.2
88,283	+		GFF793	0.21	-0.7
88,283	+		GFF793	0.21	+0.3
88,283	+		GFF793	0.21	-0.0
88,283	+		GFF793	0.21	-0.9
88,283	+		GFF793	0.21	-2.7
88,283	+		GFF793	0.21	+0.4
88,283	+		GFF793	0.21	+1.7
88,283	+		GFF793	0.21	-1.4
88,283	+		GFF793	0.21	+0.1
88,283	+		GFF793	0.21	+0.4
88,284	-		GFF793	0.21	-0.1
88,284	-		GFF793	0.21	-0.2
88,284	-		GFF793	0.21	-0.6
88,284	-		GFF793	0.21	+0.2
88,284	-		GFF793	0.21	-0.7
88,403	+		GFF793	0.22	-0.9
88,403	+		GFF793	0.22	+0.1
88,736	+		GFF793	0.24	+0.5
88,736	+		GFF793	0.24	-0.2
88,886	+		GFF793	0.25	+0.4
88,887	-		GFF793	0.25	-1.0
89,253	-		GFF793	0.28	+1.1
89,456	+		GFF793	0.30	+1.0
89,456	+		GFF793	0.30	-0.7
89,456	+		GFF793	0.30	-1.2
89,456	+		GFF793	0.30	-0.7
89,456	+		GFF793	0.30	+1.6
89,457	-		GFF793	0.30	-0.3
89,457	-		GFF793	0.30	-0.3
89,457	-		GFF793	0.30	-0.1
89,457	-		GFF793	0.30	+0.5
89,457	-		GFF793	0.30	-0.6
89,468	+		GFF793	0.30	-0.8
89,468	+		GFF793	0.30	-0.1
89,469	-		GFF793	0.30	-0.6
89,469	-		GFF793	0.30	-1.8
89,819	+		GFF793	0.33	-0.6
89,820	-		GFF793	0.33	+0.0
89,820	-		GFF793	0.33	-1.1
89,820	-		GFF793	0.33	+0.2
89,885	+		GFF793	0.33	-0.9
89,885	+		GFF793	0.33	-1.8
89,885	+		GFF793	0.33	-0.3
89,885	+		GFF793	0.33	-0.1
89,886	-		GFF793	0.33	-0.4
89,886	-		GFF793	0.33	+0.9
89,886	-		GFF793	0.33	-0.3
89,886	-		GFF793	0.33	-0.4
89,886	-		GFF793	0.33	-0.3
89,886	-		GFF793	0.33	+0.3
90,332	+		GFF793	0.37	-1.2
90,524	+		GFF793	0.38	-0.7
90,524	+		GFF793	0.38	-0.9
90,525	-		GFF793	0.38	-0.8
90,525	-		GFF793	0.38	-0.5
90,525	-		GFF793	0.38	+0.6
90,525	-		GFF793	0.38	-0.4
90,525	-		GFF793	0.38	+1.4
90,525	-		GFF793	0.38	+0.2
90,525	-		GFF793	0.38	-0.2
90,525	-		GFF793	0.38	+0.3
90,530	+		GFF793	0.38	-0.2
90,530	+		GFF793	0.38	+0.5
90,530	+		GFF793	0.38	-0.6
90,530	+		GFF793	0.38	-1.6
90,530	+		GFF793	0.38	-0.4
90,530	+		GFF793	0.38	-2.1
90,530	+		GFF793	0.38	-0.7
90,530	+		GFF793	0.38	-0.5
90,531	-		GFF793	0.38	+0.1
90,531	-		GFF793	0.38	+0.8
90,531	-		GFF793	0.38	-2.3
90,531	-		GFF793	0.38	+1.8
90,531	-		GFF793	0.38	-0.8
90,531	-		GFF793	0.38	-1.5
90,531	-		GFF793	0.38	-1.3
90,531	-		GFF793	0.38	-0.2
90,791	+		GFF793	0.40	+1.7
90,791	+		GFF793	0.40	+1.6
90,791	+		GFF793	0.40	-0.0
90,791	+		GFF793	0.40	+0.4
90,791	+		GFF793	0.40	-0.8
90,791	+		GFF793	0.40	-0.8
90,792	-		GFF793	0.40	-0.7
90,792	-		GFF793	0.40	-0.2
90,792	-		GFF793	0.40	+0.1
90,792	-		GFF793	0.40	+1.1
90,792	-		GFF793	0.40	-0.9
90,917	+		GFF793	0.41	+0.1
90,917	+		GFF793	0.41	+0.1
90,917	+		GFF793	0.41	-1.1
90,917	+		GFF793	0.41	+0.1
90,917	+		GFF793	0.41	-0.7
90,917	+		GFF793	0.41	-1.2
90,917	+		GFF793	0.41	-0.4
90,938	+		GFF793	0.41	+0.0
90,938	+		GFF793	0.41	-0.3
90,938	+		GFF793	0.41	-0.0
90,938	+		GFF793	0.41	-0.6
90,938	+		GFF793	0.41	-0.2
90,938	+		GFF793	0.41	-0.5
91,127	+		GFF793	0.43	-0.6
91,128	-		GFF793	0.43	-0.4
91,128	-		GFF793	0.43	-0.3
91,136	+		GFF793	0.43	+0.0
91,136	+		GFF793	0.43	-0.4
91,136	+		GFF793	0.43	+0.1
91,136	+		GFF793	0.43	-0.9
91,151	+		GFF793	0.43	-0.1
91,151	+		GFF793	0.43	-0.5
91,409	+		GFF793	0.45	-1.0
91,409	+		GFF793	0.45	+0.3
91,409	+		GFF793	0.45	+0.6
91,409	+		GFF793	0.45	+0.3
91,410	-		GFF793	0.45	-0.2
91,410	-		GFF793	0.45	-1.4
91,518	+		GFF793	0.46	+0.4
91,518	+		GFF793	0.46	+0.9
91,518	+		GFF793	0.46	+0.4
91,518	+		GFF793	0.46	-0.8
91,518	+		GFF793	0.46	+1.4
91,518	+		GFF793	0.46	+0.9
91,518	+		GFF793	0.46	+0.2
91,518	+		GFF793	0.46	+0.4
91,518	+		GFF793	0.46	+0.0
91,518	+		GFF793	0.46	-0.8
91,518	+		GFF793	0.46	+0.5
91,518	+		GFF793	0.46	-0.2
91,519	-		GFF793	0.46	+0.9
91,519	-		GFF793	0.46	-0.3
91,519	-		GFF793	0.46	+1.7
91,519	-		GFF793	0.46	+0.8
91,519	-		GFF793	0.46	-2.7
91,519	-		GFF793	0.46	-1.1
91,519	-		GFF793	0.46	-0.2
91,519	-		GFF793	0.46	-0.3
91,519	-		GFF793	0.46	+0.3
91,519	-		GFF793	0.46	-0.3
91,519	-		GFF793	0.46	-0.2
91,519	-		GFF793	0.46	+0.3
91,519	-		GFF793	0.46	+1.4
91,519	-		GFF793	0.46	-0.4
91,519	-		GFF793	0.46	-0.1
91,519	-		GFF793	0.46	-0.3
91,519	-		GFF793	0.46	+0.0
91,519	-		GFF793	0.46	+0.0
91,519	-		GFF793	0.46	-0.4
91,519	-		GFF793	0.46	+0.2
91,519	-		GFF793	0.46	-1.1
91,634	-		GFF793	0.47	+0.4
91,634	-		GFF793	0.47	-0.0
91,634	-		GFF793	0.47	+0.4
91,634	-		GFF793	0.47	-1.9
91,634	-		GFF793	0.47	-0.3
91,634	-		GFF793	0.47	+0.8
91,664	+		GFF793	0.47	+0.7
91,664	+		GFF793	0.47	+0.0
91,665	-		GFF793	0.47	-1.6
91,665	-		GFF793	0.47	+1.8
91,688	+		GFF793	0.47	-0.3
91,832	+		GFF793	0.48	-0.5
91,832	+		GFF793	0.48	+1.9
91,832	+		GFF793	0.48	+0.8
91,833	-		GFF793	0.48	-0.9
91,833	-		GFF793	0.48	+0.7
91,912	+		GFF793	0.49	+0.1
91,912	+		GFF793	0.49	-0.6
91,912	+		GFF793	0.49	+0.4
91,913	-		GFF793	0.49	+0.7
91,913	-		GFF793	0.49	-1.0
91,913	-		GFF793	0.49	-0.0
91,913	-		GFF793	0.49	+2.4
92,186	+		GFF793	0.51	-1.6
92,186	+		GFF793	0.51	+0.5
92,186	+		GFF793	0.51	-0.3
92,186	+		GFF793	0.51	+0.1
92,186	+		GFF793	0.51	+0.0
92,187	-		GFF793	0.51	-0.0
92,187	-		GFF793	0.51	-0.3
92,187	-		GFF793	0.51	-0.2
92,339	+		GFF793	0.52	-0.5
92,340	-		GFF793	0.52	+0.7
92,462	+		GFF793	0.53	+0.5
92,463	-		GFF793	0.53	+0.6
92,463	-		GFF793	0.53	-1.9
92,480	+		GFF793	0.53	-0.9
92,480	+		GFF793	0.53	+0.4
92,480	+		GFF793	0.53	-0.5
92,498	+		GFF793	0.53	-1.4
92,499	-		GFF793	0.53	-0.4
92,504	+		GFF793	0.54	+0.3
92,505	-		GFF793	0.54	+0.9
92,505	-		GFF793	0.54	-0.9
92,505	-		GFF793	0.54	-0.4
92,505	-		GFF793	0.54	-0.5
92,807	+		GFF793	0.56	-0.8
92,807	+		GFF793	0.56	-0.0
92,807	+		GFF793	0.56	-0.3
92,807	+		GFF793	0.56	+0.6
92,807	+		GFF793	0.56	-0.6
92,808	-		GFF793	0.56	+0.2
92,808	-		GFF793	0.56	-0.0
92,808	-		GFF793	0.56	+0.2
92,808	-		GFF793	0.56	-0.3
93,002	+		GFF793	0.57	+0.6
93,002	+		GFF793	0.57	+0.7
93,003	-		GFF793	0.57	-0.5
93,003	-		GFF793	0.57	+0.9
93,623	+		GFF793	0.62	-0.1
93,671	+		GFF793	0.63	-0.0
93,672	-		GFF793	0.63	-0.9
93,672	-		GFF793	0.63	-0.8
93,692	+		GFF793	0.63	+1.2
93,692	+		GFF793	0.63	+0.4
93,693	-		GFF793	0.63	-0.3
93,693	-		GFF793	0.63	+0.4
93,693	-		GFF793	0.63	+0.2
93,693	-		GFF793	0.63	+0.7
93,693	-		GFF793	0.63	-2.3
93,693	-		GFF793	0.63	-1.7
93,896	+		GFF793	0.64	+0.3
93,896	+		GFF793	0.64	+0.8
93,896	+		GFF793	0.64	-2.6
93,896	+		GFF793	0.64	-1.2
93,896	+		GFF793	0.64	+0.3
93,896	+		GFF793	0.64	+0.0
93,897	-		GFF793	0.64	+1.0
93,935	+		GFF793	0.65	-0.6
93,936	-		GFF793	0.65	-0.6
94,157	+		GFF793	0.66	-0.4
94,157	+		GFF793	0.66	-0.3
94,157	+		GFF793	0.66	-0.2
94,157	+		GFF793	0.66	-0.5
94,158	-		GFF793	0.66	+1.0
94,158	-		GFF793	0.66	-0.5
94,158	-		GFF793	0.66	+0.1
94,296	-		GFF793	0.68	-0.3
94,296	-		GFF793	0.68	+0.5
94,296	-		GFF793	0.68	-0.2
94,296	-		GFF793	0.68	-0.0
94,442	+		GFF793	0.69	-0.1
94,442	+		GFF793	0.69	-0.4
94,442	+		GFF793	0.69	+0.5
94,442	+		GFF793	0.69	-0.3
94,442	+		GFF793	0.69	-0.1
94,442	+		GFF793	0.69	+0.5
94,443	-		GFF793	0.69	-0.6
94,443	-		GFF793	0.69	+0.5
94,443	-		GFF793	0.69	+0.2
94,443	-		GFF793	0.69	+0.8
94,443	-		GFF793	0.69	-0.5
94,443	-		GFF793	0.69	-0.2
94,443	-		GFF793	0.69	+0.5
94,443	-		GFF793	0.69	-0.1
94,443	-		GFF793	0.69	-0.4
94,877	-		GFF793	0.72	-0.9
94,886	+		GFF793	0.72	-1.4
94,886	+		GFF793	0.72	-0.6
94,886	+		GFF793	0.72	-0.9
94,886	+		GFF793	0.72	-0.0
94,887	-		GFF793	0.72	+0.4
94,887	-		GFF793	0.72	+1.4
94,887	-		GFF793	0.72	+0.6
95,020	+		GFF793	0.73	+0.3
95,020	+		GFF793	0.73	+1.4
95,020	+		GFF793	0.73	-1.1
95,021	-		GFF793	0.73	+1.2
95,021	-		GFF793	0.73	+1.4
95,030	+		GFF793	0.73	-0.4
95,030	+		GFF793	0.73	-0.3
95,030	+		GFF793	0.73	+0.4
95,030	+		GFF793	0.73	-0.8
95,030	+		GFF793	0.73	+0.4
95,030	+		GFF793	0.73	-0.6
95,031	-		GFF793	0.73	+0.4
95,031	-		GFF793	0.73	+0.4
95,031	-		GFF793	0.73	-2.1
95,057	+		GFF793	0.73	-0.0
95,057	+		GFF793	0.73	-0.6
95,058	-		GFF793	0.73	-0.2
95,058	-		GFF793	0.73	-0.1
95,165	+		GFF793	0.74	-0.3
95,165	+		GFF793	0.74	+0.7
95,165	+		GFF793	0.74	+1.7
95,165	+		GFF793	0.74	-0.2
95,166	-		GFF793	0.74	+0.2
95,166	-		GFF793	0.74	-1.7
95,166	-		GFF793	0.74	+0.0
95,166	-		GFF793	0.74	-0.3
95,210	+		GFF793	0.75	+1.7
95,210	+		GFF793	0.75	+0.6
95,210	+		GFF793	0.75	+0.5
95,211	-		GFF793	0.75	+1.1
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